Strain identifier
BacDive ID: 162449
Type strain: 
Species: Arsukibacterium tuosuense
Strain history: Z.-P. Liu TS-T4.
NCBI tax ID(s): 1323745 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 162449
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Arsukibacterium tuosuense JCM 19264 is a mesophilic, Gram-negative bacterium that was isolated from Saline water from Tuosu Lake in Qaidam Basin.
NCBI tax id
- NCBI tax id: 1323745
- Matching level: species
strain history
- @ref: 67770
- history: Z.-P. Liu TS-T4.
doi: 10.13145/bacdive162449.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Gammaproteobacteria, not assigned to order
- family: Gammaproteobacteria, not assigned to family
- genus: Arsukibacterium
- species: Arsukibacterium tuosuense
- full scientific name: Arsukibacterium tuosuense (Zhong et al. 2014) Wang et al. 2022
synonyms
- @ref: 20215
- synonym: Rheinheimera tuosuensis
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Chromatiaceae
genus: Rheinheimera
species: Rheinheimera tuosuensis
full scientific name: Rheinheimera tuosuensis Zhong et al. 2014
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 99 |
| 125439 | negative | 99 |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 97.8
spore formation
- @ref: 125439
- spore formation: no
- confidence: 96.7
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Saline water from Tuosu Lake in Qaidam Basin
- geographic location: Qinghai Province
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Arsukibacterium tuosuense strain TS-T4 from China 16S ribosomal RNA gene, partial sequence
- accession: KC762310
- length: 1496
- database: nuccore
- NCBI tax ID: 1323745
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rheinheimera tuosuensis strain CGMCC 1.12461 | 1323745.3 | wgs | patric | 1323745 |
| 66792 | Rheinheimera tuosuensis CGMCC 1.12461 | 2721755863 | draft | img | 1323745 |
| 67770 | Arsukibacterium tuosuense CGMCC 1.12461 | GCA_900215315 | contig | ncbi | 1323745 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.106 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 87.228 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 78.689 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.802 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 84.901 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 96.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 80.6 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 97.8 |
External links
@ref: 67770
culture collection no.: JCM 19264, CGMCC 1.12461
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24408524 | Rheinheimera tuosuensis sp. nov., isolated from a saline lake. | Zhong ZP, Liu Y, Liu LZ, Wang F, Zhou YG, Liu ZP | Int J Syst Evol Microbiol | 10.1099/ijs.0.056473-0 | 2014 | Bacterial Typing Techniques, Base Composition, China, Chromatiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics |
| Phylogeny | 35852492 | Arsukibacterium indicum sp. nov., isolated from deep-sea sediment, and transfer of Rheinheimera tuosuensis and Rheinheimera perlucida to the genus Arsukibacterium as Arsukibacterium tuosuense comb. nov. and Arsukibacterium perlucidum comb. nov. | Wang Z, Cheng JH, Zhang XY, Xu F, Fu HH, Li CY, Zhang YZ, Chen XL, Song XY, Zhang XY | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005455 | 2022 | Bacterial Typing Techniques, Base Composition, Chromatiaceae, DNA, Bacterial/genetics, *Fatty Acids/chemistry, *Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |