Strain identifier

BacDive ID: 162414

Type strain: Yes

Species: Flavobacterium panacisoli

Strain history: D.-C. Yang and Y.-J. Kim DCY70.

NCBI tax ID(s): 1249629 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 8.1 (current version)

General

@ref: 67770

BacDive-ID: 162414

keywords: 16S sequence, Bacteria, mesophilic

description: Flavobacterium panacisoli JCM 19162 is a mesophilic bacterium that was isolated from Soil of a ginseng field.

NCBI tax id

  • NCBI tax id: 1249629
  • Matching level: species

strain history

  • @ref: 67770
  • history: D.-C. Yang and Y.-J. Kim DCY70.

doi: 10.13145/bacdive162414.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium panacisoli
  • full scientific name: Flavobacterium panacisoli Jung et al. 2016

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium panacisoli

full scientific name: Flavobacterium panacisoli Jung et al.

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-6

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil of a ginseng field
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

Sequence information

16S sequences

  • @ref: 67770
  • description: Flavobacterium panacisoli 16S ribosomal RNA gene, partial sequence
  • accession: JX863366
  • length: 1381
  • database: ena
  • NCBI tax ID: 1249629

GC content

  • @ref: 67770
  • GC-content: 34.9
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 19162, KCTC 32393

literature

  • topic: Phylogeny
  • Pubmed-ID: 27120464
  • title: Flavobacterium panacisoli sp. nov., isolated from soil of a ginseng field.
  • authors: Jung SY, Kim YJ, Hoang VA, Jin Y, Nguyen NL, Oh KH, Yang DC
  • journal: Arch Microbiol
  • DOI: 10.1007/s00203-016-1216-6
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/*analysis, *Flavobacterium/classification/genetics/isolation & purification, Panax/microbiology, Phosphatidylethanolamines/*analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Soil Microbiology, Vitamin K 2/*analogs & derivatives/analysis
  • topic2: Transcriptome

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/