Strain identifier
BacDive ID: 162396
Type strain:
Species: Vibrio sp.
Strain history: T. Kudo W'5 <-- T. Inoue.
NCBI tax ID(s): 1481934 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162396
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Vibrio sp. JCM 19063 is a mesophilic, Gram-negative bacterium of the family Vibrionaceae.
NCBI tax id
- NCBI tax id: 1481934
- Matching level: species
strain history
- @ref: 67770
- history: T. Kudo W'5 <-- T. Inoue.
doi: 10.13145/bacdive162396.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio sp.
- full scientific name: Vibrio Pacini 1854 (Approved Lists 1980)
synonyms
@ref synonym 20215 Beneckea 20215 Allomonas 20215 Lucibacterium
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio sp.
full scientific name: Vibrio sp.
type strain: no
Morphology
cell morphology
@ref | gram stain | confidence | motility |
---|---|---|---|
69480 | negative | 99.97 | |
69480 | 96.809 | yes |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.989 |
69481 | no | 100 |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Vibrio sp. JCM 19063 | 1481934.3 | wgs | patric | 1481934 |
66792 | Vibrio sp. JCM 19063 | 2681813041 | draft | img | 1481934 |
67770 | Vibrio sp. JCM 19063 | GCA_001310755 | contig | ncbi | 1481934 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 91.927 | no |
gram-positive | no | 98.471 | no |
anaerobic | no | 97.245 | no |
aerobic | yes | 92.868 | no |
halophile | no | 50.549 | no |
spore-forming | no | 94.032 | no |
thermophile | no | 99.482 | yes |
glucose-util | yes | 89.19 | no |
flagellated | yes | 87.379 | no |
glucose-ferment | yes | 87.895 | no |
External links
@ref: 67770
culture collection no.: JCM 19063
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |