Strain identifier
BacDive ID: 162394
Type strain:
Species: Vibrio sp.
Strain history: T. Kudo W'3 <-- T. Inoue.
NCBI tax ID(s): 1481931 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162394
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Vibrio sp. JCM 19061 is a mesophilic, Gram-negative bacterium of the family Vibrionaceae.
NCBI tax id
- NCBI tax id: 1481931
- Matching level: species
strain history
- @ref: 67770
- history: T. Kudo W'3 <-- T. Inoue.
doi: 10.13145/bacdive162394.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio sp.
- full scientific name: Vibrio Pacini 1854 (Approved Lists 1980)
synonyms
@ref synonym 20215 Beneckea 20215 Allomonas 20215 Lucibacterium
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio sp.
full scientific name: Vibrio sp.
type strain: no
Morphology
cell morphology
@ref | gram stain | confidence | motility |
---|---|---|---|
69480 | negative | 99.987 | |
69480 | 96.88 | yes |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.997 |
69481 | no | 100 |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Vibrio sp. JCM 19061 | GCA_001310695 | contig | ncbi | 1481931 |
66792 | Vibrio sp. JCM 19061 | 1481931.3 | wgs | patric | 1481931 |
66792 | Vibrio sp. JCM 19061 | 2728369654 | draft | img | 1481931 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 90.889 | no |
gram-positive | no | 98.344 | no |
anaerobic | no | 96.764 | no |
aerobic | yes | 92.074 | no |
halophile | no | 50 | no |
spore-forming | no | 94.398 | no |
thermophile | no | 99.479 | yes |
glucose-util | yes | 89.068 | no |
flagellated | yes | 89.918 | no |
glucose-ferment | yes | 87.904 | no |
External links
@ref: 67770
culture collection no.: JCM 19061
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |