Strain identifier

BacDive ID: 162394

Type strain: No

Species: Vibrio sp.

Strain history: T. Kudo W'3 <-- T. Inoue.

NCBI tax ID(s): 1481931 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
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General

@ref: 67770

BacDive-ID: 162394

keywords: genome sequence, Bacteria, mesophilic, Gram-negative

description: Vibrio sp. JCM 19061 is a mesophilic, Gram-negative bacterium of the family Vibrionaceae.

NCBI tax id

  • NCBI tax id: 1481931
  • Matching level: species

strain history

  • @ref: 67770
  • history: T. Kudo W'3 <-- T. Inoue.

doi: 10.13145/bacdive162394.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio sp.
  • full scientific name: Vibrio Pacini 1854 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Beneckea
    20215Allomonas
    20215Lucibacterium

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio sp.

full scientific name: Vibrio sp.

type strain: no

Morphology

cell morphology

@refgram stainconfidencemotility
69480negative99.987
6948096.88yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.997
69481no100

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio sp. JCM 19061GCA_001310695contigncbi1481931
66792Vibrio sp. JCM 190611481931.3wgspatric1481931
66792Vibrio sp. JCM 190612728369654draftimg1481931

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.889no
gram-positiveno98.344no
anaerobicno96.764no
aerobicyes92.074no
halophileno50no
spore-formingno94.398no
thermophileno99.479yes
glucose-utilyes89.068no
flagellatedyes89.918no
glucose-fermentyes87.904no

External links

@ref: 67770

culture collection no.: JCM 19061

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1