Strain identifier
BacDive ID: 162390
Type strain: 
Species: Shewanella sp.
Strain history: T. Kudo Y44.
NCBI tax ID(s): 1460651 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162390
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Shewanella sp. JCM 19057 is a mesophilic, Gram-negative bacterium of the family Shewanellaceae.
NCBI tax id
- NCBI tax id: 1460651
- Matching level: species
strain history
- @ref: 67770
- history: T. Kudo Y44.
doi: 10.13145/bacdive162390.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella sp.
- full scientific name: Shewanella MacDonell and Colwell 1986
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella sp.
full scientific name: Shewanella sp.
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | negative | 99.994 | |
| 69480 | 97.357 | yes |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.918 |
| 69481 | no | 100 |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Shewanella sp. JCM 19057 | GCA_001310535 | contig | ncbi | 1460651 |
| 66792 | Shewanella sp. JCM 19057 | 1460651.3 | wgs | patric | 1460651 |
| 66792 | Shewanella sp. JCM 19057 | 2681813037 | draft | img | 1460651 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 94.182 | no |
| gram-positive | no | 99.113 | no |
| anaerobic | no | 95.101 | no |
| halophile | no | 60.514 | no |
| spore-forming | no | 95.94 | no |
| glucose-util | yes | 88.784 | no |
| thermophile | no | 99.693 | yes |
| aerobic | yes | 51.984 | no |
| flagellated | yes | 92.582 | no |
| glucose-ferment | no | 64.044 | no |
External links
@ref: 67770
culture collection no.: JCM 19057
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |