Strain identifier
BacDive ID: 162382
Type strain:
Species: Arthrobacter sp.
Strain history: T. Kudo H656.
NCBI tax ID(s): 1460643 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162382
keywords: genome sequence, Bacteria, mesophilic, Gram-positive
description: Arthrobacter sp. JCM 19049 is a mesophilic, Gram-positive bacterium that was isolated from Yellowfin toxic goby .
NCBI tax id
- NCBI tax id: 1460643
- Matching level: species
strain history
- @ref: 67770
- history: T. Kudo H656.
doi: 10.13145/bacdive162382.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter sp.
- full scientific name: Arthrobacter Conn and Dimmick 1947 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter sp.
full scientific name: Arthrobacter sp.
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.996 |
69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Yellowfin toxic goby (Yongeichthys criniger)
- host species: Yongeichthys criniger
- geographic location: coast of Iriomote Island
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Arthrobacter sp. JCM 19049 | 1460643.3 | wgs | patric | 1460643 |
66792 | Arthrobacter sp. JCM 19049 | 2728369644 | draft | img | 1460643 |
67770 | Arthrobacter sp. JCM 19049 | GCA_001310435 | contig | ncbi | 1460643 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 93.422 | no |
gram-positive | yes | 93.561 | no |
anaerobic | no | 99.463 | no |
halophile | yes | 60.765 | no |
spore-forming | no | 93.652 | no |
glucose-util | yes | 89.47 | no |
thermophile | no | 98.587 | no |
aerobic | yes | 95.059 | no |
flagellated | no | 98.312 | no |
glucose-ferment | no | 91.311 | no |
External links
@ref: 67770
culture collection no.: JCM 19049
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |