Strain identifier
BacDive ID: 162377
Type strain: 
Species: Halolactibacillus sp.
Strain history: T. Kudo G226.
NCBI tax ID(s): 1460638 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162377
keywords: genome sequence, Bacteria, mesophilic, Gram-positive
description: Halolactibacillus sp. JCM 19043 is a mesophilic, Gram-positive bacterium of the family Bacillaceae.
NCBI tax id
- NCBI tax id: 1460638
- Matching level: species
strain history
- @ref: 67770
- history: T. Kudo G226.
doi: 10.13145/bacdive162377.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Halolactibacillus
- species: Halolactibacillus sp.
- full scientific name: Halolactibacillus Ishikawa et al. 2005
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Halolactibacillus
species: Halolactibacillus sp.
full scientific name: Halolactibacillus sp.
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 100 | |
| 69480 | 93.492 | yes |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halolactibacillus sp. JCM 19043 | 1460638.5 | wgs | patric | 1460638 |
| 66792 | Halolactibacillus sp. JCM 19043 | 2728369642 | draft | img | 1460638 |
| 67770 | Halolactibacillus sp. JCM 19043 | GCA_001310395 | contig | ncbi | 1460638 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 88 | no |
| motile | yes | 87.485 | no |
| gram-positive | yes | 90.882 | no |
| anaerobic | no | 93.575 | no |
| halophile | yes | 86.156 | no |
| spore-forming | yes | 63.114 | no |
| glucose-util | yes | 88.043 | no |
| thermophile | no | 95.957 | yes |
| aerobic | no | 91.781 | no |
| flagellated | yes | 63.999 | no |
| glucose-ferment | yes | 66.192 | no |
External links
@ref: 67770
culture collection no.: JCM 19043
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |