Strain identifier
BacDive ID: 162370
Type strain:
Species: Bacillus sp.
Strain history: T. Kudo C307.
NCBI tax ID(s): 1481928 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162370
keywords: genome sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Bacillus sp. JCM 19034 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Sea cucumber, at a depth of 236 m.
NCBI tax id
- NCBI tax id: 1481928
- Matching level: species
strain history
- @ref: 67770
- history: T. Kudo C307.
doi: 10.13145/bacdive162370.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus sp.
- full scientific name: Bacillus Cohn 1872 (Approved Lists 1980)
synonyms
@ref synonym 20215 Quasibacillus 20215 Pseudobacillus 20215 Maribacillus
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Bacillus
species: Bacillus sp.
full scientific name: Bacillus sp.
type strain: no
Morphology
cell morphology
@ref | gram stain | confidence | motility |
---|---|---|---|
69480 | positive | 100 | |
69480 | 93.554 | yes |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | yes | 100 |
69481 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sea cucumber, at a depth of 236 m
- geographic location: coast of Fukue Island, Goto Islands
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bacillus sp. JCM 19034 | GCA_001310635 | contig | ncbi | 1481928 |
66792 | Bacillus sp. JCM 19034 | 1481928.3 | wgs | patric | 1481928 |
66792 | Bacillus sp. JCM 19034 | 2728369651 | draft | img | 1481928 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 87.367 | no |
gram-positive | yes | 90.149 | no |
anaerobic | no | 98.796 | no |
aerobic | yes | 89.706 | no |
halophile | yes | 63.52 | no |
spore-forming | yes | 93.664 | no |
thermophile | no | 99.039 | no |
glucose-util | yes | 89.902 | no |
flagellated | yes | 82.088 | no |
glucose-ferment | no | 91.7 | no |
External links
@ref: 67770
culture collection no.: JCM 19034
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |