Strain identifier

BacDive ID: 162370

Type strain: No

Species: Bacillus sp.

Strain history: T. Kudo C307.

NCBI tax ID(s): 1481928 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
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General

@ref: 67770

BacDive-ID: 162370

keywords: genome sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Bacillus sp. JCM 19034 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Sea cucumber, at a depth of 236 m.

NCBI tax id

  • NCBI tax id: 1481928
  • Matching level: species

strain history

  • @ref: 67770
  • history: T. Kudo C307.

doi: 10.13145/bacdive162370.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus sp.
  • full scientific name: Bacillus Cohn 1872 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Quasibacillus
    20215Pseudobacillus
    20215Maribacillus

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Bacillus

species: Bacillus sp.

full scientific name: Bacillus sp.

type strain: no

Morphology

cell morphology

@refgram stainconfidencemotility
69480positive100
6948093.554yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480yes100
69481yes100

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Sea cucumber, at a depth of 236 m
  • geographic location: coast of Fukue Island, Goto Islands
  • country: Japan
  • origin.country: JPN
  • continent: Asia

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bacillus sp. JCM 19034GCA_001310635contigncbi1481928
66792Bacillus sp. JCM 190341481928.3wgspatric1481928
66792Bacillus sp. JCM 190342728369651draftimg1481928

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileyes87.367no
gram-positiveyes90.149no
anaerobicno98.796no
aerobicyes89.706no
halophileyes63.52no
spore-formingyes93.664no
thermophileno99.039no
glucose-utilyes89.902no
flagellatedyes82.088no
glucose-fermentno91.7no

External links

@ref: 67770

culture collection no.: JCM 19034

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1