Strain identifier
BacDive ID: 162368
Type strain: 
Species: Halomonas sp.
Strain history: T. Kudo A130.
NCBI tax ID(s): 1460633 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 162368
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Halomonas sp. JCM 19032 is a mesophilic, Gram-negative bacterium of the family Halomonadaceae.
NCBI tax id
- NCBI tax id: 1460633
- Matching level: species
strain history
- @ref: 67770
- history: T. Kudo A130.
doi: 10.13145/bacdive162368.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Halomonas
- species: Halomonas sp.
- full scientific name: Halomonas Vreeland et al. 1980
synonyms
@ref synonym 20215 Bisbaumannia 20215 Vreelandella 20215 Onishia 20215 Franzmannia 20215 Deleya 20215 Billgrantia 20215 Litchfieldella 20215 Volcaniella
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Halomonas
species: Halomonas sp.
full scientific name: Halomonas sp.
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 100 |
| 125439 | negative | 97.7 |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 91.444 |
| 125439 | no | 99.3 |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halomonas sp. JCM 19032 | GCA_001310355 | contig | ncbi | 1460633 |
| 66792 | Halomonas sp. JCM 19032 | 1460633.3 | wgs | patric | 1460633 |
| 66792 | Halomonas sp. JCM 19032 | 2675903421 | draft | img | 1460633 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.771 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.444 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 82.899 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 78.533 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.3 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 82.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 97.7 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 88 |
External links
@ref: 67770
culture collection no.: JCM 19032
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |