Strain identifier
BacDive ID: 162367
Type strain: 
Species: Halomonas sp.
Strain history: T. Kudo A21.
NCBI tax ID(s): 1460632 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 162367
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Halomonas sp. JCM 19031 is a mesophilic, Gram-negative bacterium of the family Halomonadaceae.
NCBI tax id
- NCBI tax id: 1460632
- Matching level: species
strain history
- @ref: 67770
- history: T. Kudo A21.
doi: 10.13145/bacdive162367.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Halomonas
- species: Halomonas sp.
- full scientific name: Halomonas Vreeland et al. 1980
synonyms
@ref synonym 20215 Bisbaumannia 20215 Vreelandella 20215 Onishia 20215 Franzmannia 20215 Deleya 20215 Billgrantia 20215 Litchfieldella 20215 Volcaniella
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Halomonas
species: Halomonas sp.
full scientific name: Halomonas sp.
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 91.709 |
| 69481 | no | 100 |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halomonas sp. JCM 19031 | GCA_001310335 | contig | ncbi | 1460632 |
| 66792 | Halomonas sp. JCM 19031 | 1460632.3 | wgs | patric | 1460632 |
| 66792 | Halomonas sp. JCM 19031 | 2728369640 | draft | img | 1460632 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.248 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.709 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 85.809 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 80.756 | no |
External links
@ref: 67770
culture collection no.: JCM 19031
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |