Strain identifier
BacDive ID: 162361
Type strain: 
Species: Paenibacillus sp.
Strain history: T. Iida Avf-127.
NCBI tax ID(s): 1301085 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162361
keywords: genome sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Paenibacillus sp. JCM 18996 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Excrements of pill bugs Armadillidium vulgare.
NCBI tax id
- NCBI tax id: 1301085
- Matching level: species
strain history
- @ref: 67770
- history: T. Iida Avf-127.
doi: 10.13145/bacdive162361.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus sp.
- full scientific name: Paenibacillus Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Aerobacillus
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus sp.
full scientific name: Paenibacillus sp.
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 100 | |
| 69480 | 90.301 | yes |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Excrements of pill bugs Armadillidium vulgare
- host species: Armadillidium vulgare
- geographic location: Wako, Saitama Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paenibacillus sp. JCM 18996 | GCA_001313085 | contig | ncbi | 1301085 |
| 66792 | Paenibacillus sp. JCM 18996 | 1301085.3 | wgs | patric | 1301085 |
| 66792 | Paenibacillus sp. JCM 18996 | 2734481930 | draft | img | 1301085 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 80.732 | no |
| gram-positive | yes | 72.325 | no |
| anaerobic | no | 98.614 | no |
| halophile | no | 93.802 | no |
| spore-forming | yes | 94.411 | no |
| thermophile | no | 68.241 | no |
| glucose-util | yes | 86.253 | no |
| flagellated | yes | 72.507 | no |
| aerobic | yes | 92.887 | no |
| glucose-ferment | no | 91.914 | no |
External links
@ref: 67770
culture collection no.: JCM 18996
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |