Strain identifier
BacDive ID: 162300
Type strain: 
Species: Rhodococcus erythropolis
Strain history: I. Ahmed and T. Fujiwara BTM4c.
NCBI tax ID(s): 1293590 (strain), 172041 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162300
keywords: genome sequence, 16S sequence, mesophilic, Gram-positive
description: Rhodococcus erythropolis JCM 18801 is a mesophilic, Gram-positive prokaryote that was isolated from Soil in an experimental field of the Yayoi Campus of the Univ. of Tokyo.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1293590 | strain |
| 172041 | species |
strain history
- @ref: 67770
- history: I. Ahmed and T. Fujiwara BTM4c.
doi: 10.13145/bacdive162300.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Rhodococcus
- species: Rhodococcus erythropolis
- full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)
synonyms
@ref synonym 20215 Mycobacterium erythropolis 20215 Rhodococcus qingshengii 20215 Rhodococcus baikonurensis 20215 Rhodococcus jialingiae 20215 Rhodococcus enclensis 20215 Rhodococcus degradans
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus baikonurensis
full scientific name: Rhodococcus baikonurensis Li et al. 2004
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 100 | |
| 69480 | 93.016 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.951
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil in an experimental field of the Yayoi Campus of the Univ. of Tokyo
- geographic location: Tokyo
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_1118.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_181;97_585;98_672;99_1118&stattab=map
- Last taxonomy: Nocardiaceae
- 16S sequence: AB288063
- Sequence Identity:
- Total samples: 28787
- soil counts: 7777
- aquatic counts: 6494
- animal counts: 11681
- plant counts: 2835
Sequence information
16S sequences
- @ref: 67770
- description: Rhodococcus baikonurensis gene for 16S ribosomal RNA, partial sequence, strain: KCTC 19793
- accession: AB288063
- length: 1502
- database: ena
- NCBI tax ID: 172041
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodococcus baikonurensis JCM 18801 | GCA_001311605 | contig | ncbi | 1293590 |
| 66792 | Rhodococcus baikonurensis JCM 18801 | 1293590.3 | wgs | patric | 1293590 |
| 66792 | Rhodococcus baikonurensis JCM 18801 | 2728369692 | draft | img | 1293590 |
GC content
- @ref: 67770
- GC-content: 50.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 74 | no |
| motile | no | 93.812 | no |
| gram-positive | yes | 84.224 | no |
| anaerobic | no | 99.452 | no |
| aerobic | yes | 92.428 | no |
| halophile | no | 89.68 | no |
| spore-forming | no | 69.568 | no |
| thermophile | no | 99.554 | yes |
| glucose-util | yes | 88.11 | no |
| flagellated | no | 98.601 | no |
| glucose-ferment | no | 88.345 | no |
External links
@ref: 67770
culture collection no.: JCM 18801, KCTC 19793, NBRC 107577
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |