Strain identifier
BacDive ID: 162299
Type strain:
Species: Achromobacter sp.
Strain history: N. Takizawa <-- H. Kiyohara AFK2.
NCBI tax ID(s): 1295134 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162299
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Achromobacter sp. JCM 18799 is a mesophilic, Gram-negative bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 1295134
- Matching level: species
strain history
- @ref: 67770
- history: N. Takizawa <-- H. Kiyohara AFK2.
doi: 10.13145/bacdive162299.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Achromobacter
- species: Achromobacter sp.
- full scientific name: Achromobacter Yabuuchi and Yano 1981
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Achromobacter
species: Achromobacter sp.
full scientific name: Achromobacter sp.
type strain: no
Morphology
cell morphology
@ref | gram stain | confidence | motility |
---|---|---|---|
69480 | negative | 99.993 | |
69480 | 94.681 | yes |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.999 |
69481 | no | 98 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil
- geographic location: Okayama
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Achromobacter sp. JCM 18799 | GCA_001312205 | contig | ncbi | 1295134 |
66792 | Achromobacter sp. JCM 18799 | 1295134.5 | wgs | patric | 1295134 |
66792 | Achromobacter sp. JCM 18799 | 2728369714 | draft | img | 1295134 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 98 | no |
motile | yes | 80.484 | no |
gram-positive | no | 97.173 | no |
anaerobic | no | 99.028 | no |
aerobic | yes | 89.494 | no |
halophile | no | 92.232 | no |
spore-forming | no | 95.084 | no |
thermophile | no | 99.361 | no |
glucose-util | no | 54.937 | no |
flagellated | no | 83.829 | no |
glucose-ferment | no | 89.579 | no |
External links
@ref: 67770
culture collection no.: JCM 18799
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |