Strain identifier

BacDive ID: 162279

Type strain: No

Species: Secundilactobacillus oryzae

Strain history: M. Tohno SG310.

NCBI tax ID(s): 1202668 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 162279

keywords: 16S sequence, Bacteria, mesophilic

description: Secundilactobacillus oryzae JCM 18673 is a mesophilic bacterium that was isolated from Fermented rice grain .

NCBI tax id

  • NCBI tax id: 1202668
  • Matching level: species

strain history

  • @ref: 67770
  • history: M. Tohno SG310.

doi: 10.13145/bacdive162279.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Secundilactobacillus
  • species: Secundilactobacillus oryzae
  • full scientific name: Secundilactobacillus oryzae (Tohno et al. 2013) Zheng et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus oryzae

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Secundilactobacillus

species: Secundilactobacillus oryzae

full scientific name: Secundilactobacillus oryzae (Tohno et al. 2013) Zheng et al. 2020

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Fermented rice grain (Oryza sativa L. subsp. japonica)
  • host species: Oryza sativa L. subsp. japonica
  • geographic location: Ohtawara, Tochigi
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_94879.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_936;97_1089;98_1299;99_94879&stattab=map
  • Last taxonomy: Secundilactobacillus oryzae
  • 16S sequence: AB731662
  • Sequence Identity:
  • Total samples: 330
  • soil counts: 32
  • aquatic counts: 42
  • animal counts: 224
  • plant counts: 32

Sequence information

16S sequences

  • @ref: 67770
  • description: Lactobacillus oryzae gene for 16S ribosomal RNA, partial sequence, strain: SG310
  • accession: AB731662
  • length: 1488
  • database: ena
  • NCBI tax ID: 1202668

GC content

  • @ref: 67770
  • GC-content: 43.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 18673

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/