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Strain identifier

BacDive ID: 162277

Type strain: Yes

Species: Salinirubrum litoreum

Strain history: H.-L. Cui; Jiangsu Univ., China; XD46.

NCBI tax ID(s): 1126234 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
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version 6:
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General

@ref: 67770

BacDive-ID: 162277

keywords: 16S sequence, Archaea, mesophilic

description: Salinirubrum litoreum JCM 18649 is a mesophilic archaeon that was isolated from Xidi marine solar saltern at Xiamen.

NCBI tax id

  • NCBI tax id: 1126234
  • Matching level: species

strain history: H.-L. Cui; Jiangsu Univ., China; XD46.

doi: 10.13145/bacdive162277.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/euryarchaeota
  • domain: Archaea
  • phylum: Euryarchaeota
  • class: Halobacteria
  • order: Halobacteriales
  • family: Halobacteriaceae
  • genus: Salinirubrum
  • species: Salinirubrum litoreum
  • full scientific name: Salinirubrum litoreum corrig. Cui and Qiu 2014
  • synonyms

    • @ref: 20215
    • synonym: Salinarubrum litoreum

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Halobacteriaceae

genus: Salinirubrum

species: Salinirubrum litoreum

full scientific name: Salinirubrum litoreum Cui and Qiu 2014

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 98.891

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.543

halophily

  • @ref: 69480
  • halophily level: halophilic
  • confidence: 99.556

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Xidi marine solar saltern at Xiamen
  • geographic location: Fujian Province
  • country: China
  • origin.country: CHN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_189159.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17662;96_69800;97_90642;98_123195;99_189159&stattab=map
  • Last taxonomy: Salinirubrum litoreum subclade
  • 16S sequence: JQ237118
  • Sequence Identity:
  • Total samples: 269
  • soil counts: 56
  • aquatic counts: 213

Sequence information

16S sequences

  • @ref: 67770
  • description: Salinirubrum litoreum strain XD46 16S ribosomal RNA gene, partial sequence
  • accession: JQ237118
  • length: 1475
  • database: ena
  • NCBI tax ID: 1126234

GC content

  • @ref: 67770
  • GC-content: 65.5
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 67770

culture collection no.: JCM 18649, CGMCC 1.12237

literature

  • topic: Phylogeny
  • Pubmed-ID: 24158535
  • title: Salinarubrum litoreum gen. nov., sp. nov.: a new member of the family Halobacteriaceae isolated from Chinese marine solar salterns.
  • authors: Cui HL, Qiu XX
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-013-0061-8
  • year: 2013
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics/metabolism, Halobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sodium Chloride/*metabolism
  • topic2: Metabolism

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes