General

@ref: 67770

BacDive-ID: 162277

keywords: 16S sequence, Archaea, mesophilic

description: Salinirubrum litoreum JCM 18649 is a mesophilic archaeon that was isolated from Xidi marine solar saltern at Xiamen.

NCBI tax id

• NCBI tax id: 1126234
• Matching level: species

strain history

• @ref: 67770
• history: H.-L. Cui; Jiangsu Univ., China; XD46.

doi: 10.13145/bacdive162277.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/archaea
• keyword: phylum/methanobacteriota
• domain: Archaea
• phylum: Methanobacteriota
• class: Halobacteria
• order: Halobacteriales
• family: Halobacteriaceae
• genus: Salinirubrum
• species: Salinirubrum litoreum
• full scientific name: Salinirubrum litoreum corrig. Cui and Qiu 2014

• synonyms

  • @ref: 20215
  • synonym: Salinarubrum litoreum

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Halobacteriaceae

genus: Salinirubrum

species: Salinirubrum litoreum

full scientific name: Salinirubrum litoreum Cui and Qiu 2014

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 37
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Xidi marine solar saltern at Xiamen
• geographic location: Fujian Province
• country: China
• origin.country: CHN
• continent: Asia

taxonmaps

• @ref: 69479
• File name: preview.99_189159.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17662;96_69800;97_90642;98_123195;99_189159&stattab=map
• Last taxonomy: Salinirubrum litoreum subclade
• 16S sequence: JQ237118
• Sequence Identity:
• Total samples: 269
• soil counts: 56
• aquatic counts: 213

Sequence information

16S sequences

• @ref: 67770
• description: Salinirubrum litoreum strain XD46 16S ribosomal RNA gene, partial sequence
• accession: JQ237118
• length: 1475
• database: ena
• NCBI tax ID: 1126234

GC content

• @ref: 67770
• GC-content: 65.5
• method: thermal denaturation, midpoint method (Tm)

External links

@ref: 67770

culture collection no.: JCM 18649, CGMCC 1.12237

literature

• topic: Phylogeny
• Pubmed-ID: 24158535
• title: Salinarubrum litoreum gen. nov., sp. nov.: a new member of the family Halobacteriaceae isolated from Chinese marine solar salterns.
• authors: Cui HL, Qiu XX
• journal: Antonie Van Leeuwenhoek
• DOI: 10.1007/s10482-013-0061-8
• year: 2013
• mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics/metabolism, Halobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sodium Chloride/*metabolism
• topic2: Metabolism

Reference