General

@ref: 67770

BacDive-ID: 162267

keywords: genome sequence, 16S sequence, Bacteria

description: Deinococcus radiopugnans JCM 18581 is a bacterium that was isolated from Soil collected from the mountain Deogyusan.

NCBI tax id

• NCBI tax id: 57497
• Matching level: species

strain history

• @ref: 67770
• history: M. K. Kim DY59.

doi: 10.13145/bacdive162267.20240510.9

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/deinococcota
• domain: Bacteria
• phylum: Deinococcota
• class: Deinococci
• order: Deinococcales
• family: Deinococcaceae
• genus: Deinococcus
• species: Deinococcus radiopugnans
• full scientific name: Deinococcus radiopugnans Brooks and Murray 1981

• synonyms

  • @ref: 20215
  • synonym: Deinococcus swuensis

@ref: 67770

domain: Bacteria

phylum: Deinococcus-Thermus

class: Deinococci

order: Deinococcales

family: Deinococcaceae

genus: Deinococcus

species: Deinococcus swuensis

full scientific name: Deinococcus swuensis Lee et al. 2015

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 30

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: MK-8

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Soil collected from the mountain Deogyusan
• geographic location: Jeonbuk Province
• country: Republic of Korea
• origin.country: KOR
• continent: Asia

taxonmaps

• @ref: 69479
• File name: preview.99_4680.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_90;96_2085;97_2512;98_3509;99_4680&stattab=map
• Last taxonomy: Deinococcus
• 16S sequence: JQ991923
• Sequence Identity:
• Total samples: 1559
• soil counts: 115
• aquatic counts: 350
• animal counts: 941
• plant counts: 153

Sequence information

16S sequences

• @ref: 67770
• description: Deinococcus swuensis strain DY59 16S ribosomal RNA gene, partial sequence
• accession: JQ991923
• length: 1360
• database: nuccore
• NCBI tax ID: 57497

Genome sequences

• @ref: 67770
• description: Deinococcus radiopugnans DY59
• accession: GCA_000800395
• assembly level: complete
• database: ncbi
• NCBI tax ID: 57497

GC content

• @ref: 67770
• GC-content: 66.5
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 18581, KCTC 33033, LMG 30469

literature

• topic: Metabolism
• Pubmed-ID: 23812810
• title: Deinococcus swuensis sp. nov., a gamma-radiation-resistant bacterium isolated from soil.
• authors: Lee JJ, Lee HJ, Jang GS, Yu JM, Cha JY, Kim SJ, Lee EB, Kim MK
• journal: J Microbiol
• DOI: 10.1007/s12275-013-3023-y
• year: 2013
• mesh: Cell Wall/metabolism/radiation effects, Deinococcus/*metabolism/radiation effects, *Gamma Rays, Peptidoglycan/metabolism, Phospholipids/metabolism, Soil Microbiology
• topic2: Phylogeny

Reference