Strain identifier

BacDive ID: 162260

Type strain: No

Species: Chryseobacterium ginsengiterrae

Strain history: D.-C. Yang and Y.-J. Kim DCY68.

NCBI tax ID(s): 1871047 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 162260

keywords: 16S sequence, Bacteria

description: Chryseobacterium ginsengiterrae JCM 18517 is a bacterium that was isolated from Soil of a ginseng field in Gochang County.

NCBI tax id

  • NCBI tax id: 1871047
  • Matching level: species

strain history

  • @ref: 67770
  • history: D.-C. Yang and Y.-J. Kim DCY68.

doi: 10.13145/bacdive162260.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium ginsengiterrae
  • full scientific name: Chryseobacterium ginsengiterrae Noh et al. 2017

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Chryseobacterium

species: Chryseobacterium sp.

full scientific name: Chryseobacterium sp.

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-6, MK-7

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil of a ginseng field in Gochang County
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_1747.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_206;97_1157;98_1381;99_1747&stattab=map
  • Last taxonomy: Chryseobacterium
  • 16S sequence: JX141783
  • Sequence Identity:
  • Total samples: 851
  • soil counts: 22
  • aquatic counts: 232
  • animal counts: 259
  • plant counts: 338

Sequence information

16S sequences

  • @ref: 67770
  • description: Epilithonimonas ginsengisoli strain DCY 78 16S ribosomal RNA gene, partial sequence
  • accession: JX141783
  • length: 1426
  • database: nuccore
  • NCBI tax ID: 1245592

GC content

  • @ref: 67770
  • GC-content: 42
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 18517, KCTC 32089

literature

  • topic: Phylogeny
  • Pubmed-ID: 28825128
  • title: Chryseobacterium ginsengiterrae sp. nov., with Beta-Glucosidase Activity Isolated from Soil of a Ginseng Field.
  • authors: Noh JH, Hoang VA, Kim YJ, Kang JP, Yang DC
  • journal: Curr Microbiol
  • DOI: 10.1007/s00284-017-1335-6
  • year: 2017
  • mesh: Aerobiosis, Bacterial Typing Techniques, Base Composition, Chryseobacterium/classification/*enzymology/genetics/*isolation & purification, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Panax/growth & development, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature, beta-Glucosidase/*metabolism
  • topic2: Enzymology

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/