Archive BacDiveID:10.13145/bacdive162258.20230509.8.1

Strain identifier

BacDive ID: 162258

Type strain:

Species: Arthrobacter gyeryongensis

Strain history: D.-C. Yang and Y.-J. Kim DCY72.

NCBI tax ID(s): 1650592 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 67770

BacDive-ID: 162258

keywords: 16S sequence, Bacteria, mesophilic

description: Arthrobacter gyeryongensis JCM 18514 is a mesophilic bacterium that was isolated from Soil of a Gynostemma pentaphyllum field in Gyeryong mountain.

NCBI tax id

NCBI tax id: 1650592
Matching level: species

strain history

@ref: 67770
history: D.-C. Yang and Y.-J. Kim DCY72.

doi: 10.13145/bacdive162258.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter gyeryongensis
full scientific name: Arthrobacter gyeryongensis Hoang et al. 2014

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter gyeryongensis

full scientific name: Arthrobacter gyeryongensis Hoang et al. 2014

type strain: yes

Culture and growth conditions

culture temp

@ref: 67770
growth: positive
type: growth
temperature: 28
range: mesophilic

Physiology and metabolism

observation

@ref: 67770
observation: quinones: MK-9(H₂), MK-10(H₂)

Isolation, sampling and environmental information

isolation

@ref: 67770
sample type: Soil of a Gynostemma pentaphyllum field in Gyeryong mountain
host species: Gynostemma pentaphyllum
geographic location: Chungcheong Province
country: Republic of Korea
origin.country: KOR
continent: Asia

taxonmaps

@ref: 69479
File name: preview.99_1285.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_99;97_138;98_155;99_1285&stattab=map
Last taxonomy: Micrococcaceae
16S sequence: JX141781
Sequence Identity:
Total samples: 110
soil counts: 49
aquatic counts: 9
animal counts: 22
plant counts: 30

Sequence information

16S sequences

@ref: 67770
description: Arthrobacter gyeryongensis strain DCY72 16S ribosomal RNA gene, partial sequence
accession: JX141781
length: 1412
database: ena
NCBI tax ID: 1650592

GC content

@ref: 67770
GC-content: 64.5
method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 18514, KCTC 33072

straininfo link

@ref: 113489
straininfo: 392257

literature

topic: Phylogeny
Pubmed-ID: 24132914
title: Arthrobacter gyeryongensis sp. nov., isolated from soil of a Gynostemma pentaphyllum field.
authors: Hoang VA, Kim YJ, Nguyen NL, Yang DC
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijs.0.053967-0
year: 2013
mesh: Arthrobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Gynostemma/*microbiology, Lysine/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry
topic2: Genetics

Reference

@id	authors	title	doi/url
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
113489	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID392257.1