Strain identifier
BacDive ID: 162238
Type strain: 
Species: Haloplanus salinus
Strain history: H.-L. Cui; Jiangsu Univ., China; YGH66.
NCBI tax ID(s): 1126245 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 162238
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Haloplanus salinus JCM 18368 is a mesophilic archaeon that was isolated from Marine solar saltern near the Sanya City.
NCBI tax id
- NCBI tax id: 1126245
- Matching level: species
strain history
- @ref: 67770
- history: H.-L. Cui; Jiangsu Univ., China; YGH66.
doi: 10.13145/bacdive162238.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Haloferacaceae
- genus: Haloplanus
- species: Haloplanus salinus
- full scientific name: Haloplanus salinus Qiu et al. 2014
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Haloferacales
family: Haloferacaceae
genus: Haloplanus
species: Haloplanus salinus
full scientific name: Haloplanus salinus Qiu et al. 2014
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 125438
- spore formation: no
- confidence: 90.612
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Marine solar saltern near the Sanya City
- geographic location: Hainan Province
- country: China
- origin.country: CHN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_189489.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17830;96_68821;97_89464;98_123431;99_189489&stattab=map
- Last taxonomy: Haloplanus salinus subclade
- 16S sequence: JQ237126
- Sequence Identity:
- Total samples: 38
- soil counts: 5
- aquatic counts: 27
- animal counts: 6
Sequence information
16S sequences
- @ref: 67770
- description: Haloplanus salinus strain YGH66 16S ribosomal RNA gene, partial sequence
- accession: JQ237126
- length: 1470
- database: nuccore
- NCBI tax ID: 1126245
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Haloplanus salinus JCM 18368 | GCA_003336245 | contig | ncbi | 1126245 |
| 66792 | Haloplanus salinus strain JCM 18368 | 1126245.3 | wgs | patric | 1126245 |
GC content
- @ref: 67770
- GC-content: 67.2
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate anaerobe | 74.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 70.8 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 52.8 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 89.2 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 77.983 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 81.574 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.612 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 70.045 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 81.388 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 85 | no |
External links
@ref: 67770
culture collection no.: JCM 18368, CGMCC 1.12127
literature
- topic: Phylogeny
- Pubmed-ID: 24129619
- title: Haloplanus salinus sp. nov., an extremely halophilic archaeon from a Chinese marine solar saltern.
- authors: Qiu XX, Zhao ML, Han D, Zhang WJ, Cui HL
- journal: Arch Microbiol
- DOI: 10.1007/s00203-013-0929-z
- year: 2013
- mesh: Bacterial Proteins/genetics, Base Composition, China, DNA, Archaeal/genetics, Glycolipids/metabolism, Halobacteriaceae/*classification/genetics/isolation & purification/*physiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/metabolism, Species Specificity
- topic2: Metabolism
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |