Strain identifier

BacDive ID: 162199

Type strain: No

Species: Polynucleobacter acidiphobus

Strain history: K. Watanabe HIN5.

NCBI tax ID(s): 556053 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 162199

keywords: 16S sequence, Bacteria

description: Polynucleobacter acidiphobus JCM 18220 is a bacterium that was isolated from Surface water of Lake Hinuma.

NCBI tax id

  • NCBI tax id: 556053
  • Matching level: species

strain history

  • @ref: 67770
  • history: K. Watanabe HIN5.

doi: 10.13145/bacdive162199.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Polynucleobacter
  • species: Polynucleobacter acidiphobus
  • full scientific name: Polynucleobacter acidiphobus Hahn et al. 2011

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Polynucleobacter

species: Polynucleobacter acidiphobus

full scientific name: Polynucleobacter acidiphobus Hahn et al. 2011

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 27

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Surface water of Lake Hinuma
  • geographic location: Ibaraki Pref.
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_9186.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_74;97_77;98_6750;99_9186&stattab=map
  • Last taxonomy: Polynucleobacter acidiphobus
  • 16S sequence: AB599868
  • Sequence Identity:
  • Total samples: 1577
  • soil counts: 7
  • aquatic counts: 1532
  • animal counts: 34
  • plant counts: 4

Sequence information

16S sequences

  • @ref: 67770
  • description: Polynucleobacter acidiphobus gene for 16S ribosomal RNA, partial sequence, strain: HIN5
  • accession: AB599868
  • length: 1470
  • database: nuccore
  • NCBI tax ID: 556053

External links

@ref: 67770

culture collection no.: JCM 18220, NBRC 107833

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/