Strain identifier
BacDive ID: 162188
Type strain: 
Species: Paenibacillus alba
Strain history: S.-S. Lee J20-6.
NCBI tax ID(s): 1197127 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 162188
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Paenibacillus alba JCM 18165 is a spore-forming, mesophilic bacterium that was isolated from Peat soil.
NCBI tax id
- NCBI tax id: 1197127
- Matching level: species
strain history
- @ref: 67770
- history: S.-S. Lee J20-6.
doi: 10.13145/bacdive162188.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus alba
- full scientific name: Paenibacillus alba Kim et al. 2015
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus alba
full scientific name: Paenibacillus alba Kim et al.
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 94.8
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | yes | 90.625 |
| 125439 | yes | 92.4 |
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Peat soil
- geographic location: Prokopyevsk, Kemerovo Oblast
- country: Russia
- origin.country: RUS
Sequence information
16S sequences
- @ref: 67770
- description: Paenibacillus sp. J20-6 16S ribosomal RNA gene, partial sequence
- accession: JQ966212
- length: 1478
- database: nuccore
- NCBI tax ID: 1197127
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paenibacillus alba strain LMG 31323 | 1197127.3 | wgs | patric | 1197127 |
| 67770 | Paenibacillus alba LMG 31323 | GCA_013204855 | scaffold | ncbi | 1197127 |
GC content
- @ref: 67770
- GC-content: 49.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 94.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 84.8 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 87.3 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 92.4 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 60.199 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.434 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 90.625 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 67.887 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 94.519 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 78.572 | no |
External links
@ref: 67770
culture collection no.: JCM 18165, KEMC 7302-005, LMG 31323
literature
- topic: Phylogeny
- Pubmed-ID: 25794481
- title: Paenibacillus alba nov., isolated from peat soil.
- authors: Kim HS, Srinivasan S, Lee SS
- journal: Curr Microbiol
- DOI: 10.1007/s00284-015-0795-9
- year: 2015
- mesh: Aerobiosis, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Locomotion, Molecular Sequence Data, Paenibacillus/*classification/genetics/*isolation & purification/physiology, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Soil, *Soil Microbiology, Vitamin K 2/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |