General

@ref: 67770

BacDive-ID: 162117

keywords: 16S sequence, Archaea, mesophilic

description: Halorubrum gandharaense JCM 17823 is a mesophilic archaeon that was isolated from Commercial rock salt imported from Pakistan.

NCBI tax id

• NCBI tax id: 1334262
• Matching level: species

strain history

• @ref: 67770
• history: H. Minegishi MK13-1.

doi: 10.13145/bacdive162117.20241212.9.2

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/archaea
• keyword: phylum/methanobacteriota
• domain: Archaea
• phylum: Methanobacteriota
• class: Halobacteria
• order: Halobacteriales
• family: Haloferacaceae
• genus: Halorubrum
• species: Halorubrum gandharaense
• full scientific name: Halorubrum gandharaense Kondo et al. 2015

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Haloferacales

family: Halorubraceae

genus: Halorubrum

species: Halorubrum gandharaense

full scientific name: Halorubrum gandharaense Kondo et al. 2015

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 37

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Commercial rock salt imported from Pakistan

taxonmaps

• @ref: 69479
• File name: preview.99_191397.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17655;96_70683;97_91798;98_124745;99_191397&stattab=map
• Last taxonomy: Halorubrum gandharaense subclade
• 16S sequence: AB563178
• Sequence Identity:
• Total samples: 90
• soil counts: 5
• aquatic counts: 77
• plant counts: 8

Sequence information

16S sequences

• @ref: 67770
• description: Halorubrum gandharaense gene for 16S ribosomal RNA, partial sequence
• accession: AB563178
• length: 1472
• database: nuccore
• NCBI tax ID: 1334262

GC content

• @ref: 67770
• GC-content: 64.1
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 17823, CECT 7963

literature

• topic: Phylogeny
• Pubmed-ID: 25870255
• title: Halorubrum gandharaense sp. nov., an alkaliphilic haloarchaeon from commercial rock salt.
• authors: Kondo Y, Minegishi H, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Takahashi-Ando N, Fukushima Y, Yoshida Y, Usami R
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.000261
• year: 2015
• mesh: Base Composition, DNA, Archaeal/genetics, Halorubrum/*classification/genetics/isolation & purification, Molecular Sequence Data, Pakistan, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride, Temperature
• topic2: Genetics

Reference