Strain identifier
BacDive ID: 162008
Type strain: 
Species: Sphingobacterium spiritivorum
Strain history: NCTC 11387 <-- B. Holmes A14/65 <-- E. R. Mitchell.
NCBI tax ID(s): 258 (species)
General
@ref: 67770
BacDive-ID: 162008
keywords: 16S sequence, Bacteria, mesophilic
description: Sphingobacterium spiritivorum JCM 1733 is a mesophilic bacterium that was isolated from Wound swab.
NCBI tax id
- NCBI tax id: 258
- Matching level: species
strain history
- @ref: 67770
- history: NCTC 11387 <-- B. Holmes A14/65 <-- E. R. Mitchell.
doi: 10.13145/bacdive162008.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Sphingobacterium
- species: Sphingobacterium spiritivorum
- full scientific name: Sphingobacterium spiritivorum (Holmes et al. 1982) Yabuuchi et al. 1983
synonyms
@ref synonym 20215 Flavobacterium spiritivorum 20215 Flavobacterium yabuuchiae
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Sphingobacterium
species: Sphingobacterium spiritivorum
full scientific name: Sphingobacterium spiritivorum (Holmes et al. 1982) Yabuuchi et al. 1983
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Wound swab
taxonmaps
- @ref: 69479
- File name: preview.99_3331.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15366;96_1738;97_2079;98_2555;99_3331&stattab=map
- Last taxonomy: Sphingobacterium spiritivorum subclade
- 16S sequence: LC060921
- Sequence Identity:
- Total samples: 7762
- soil counts: 926
- aquatic counts: 1560
- animal counts: 4723
- plant counts: 553
Sequence information
16S sequences
- @ref: 67770
- description: Sphingobacterium spiritivorum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1733
- accession: LC060921
- length: 1445
- database: ena
- NCBI tax ID: 258
GC content
- @ref: 67770
- GC-content: 41.8
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 67770
culture collection no.: JCM 1733, ATCC 35003, NCTC 11387
straininfo link
- @ref: 113486
- straininfo: 45968
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113486 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID45968.1 |