Strain identifier

BacDive ID: 161930

Type strain: Yes

Species: Halorubrum salinum

Strain history: H.-L. Cui; Jiangsu Univ., China; GX71.

NCBI tax ID(s): 767517 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 161930

keywords: 16S sequence, Archaea, mesophilic

description: Halorubrum salinum JCM 17093 is a mesophilic archaeon that was isolated from Gangxi marine solar saltern near the Weihai City.

NCBI tax id

  • NCBI tax id: 767517
  • Matching level: species

strain history

  • @ref: 67770
  • history: H.-L. Cui; Jiangsu Univ., China; GX71.

doi: 10.13145/bacdive161930.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Haloferacales
  • family: Halorubraceae
  • genus: Halorubrum
  • species: Halorubrum salinum
  • full scientific name: Halorubrum salinum Zhang and Cui 2014

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Haloferacales

family: Halorubraceae

genus: Halorubrum

species: Halorubrum salinum

full scientific name: Halorubrum salinum Zhang and Cui 2014

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Gangxi marine solar saltern near the Weihai City
  • geographic location: Shandong Province
  • country: China
  • origin.country: CHN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_187716.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17655;96_68889;97_89858;98_122183;99_187716&stattab=map
  • Last taxonomy: Halorubrum salinum
  • 16S sequence: HM063951
  • Sequence Identity:
  • Total samples: 4
  • aquatic counts: 4

Sequence information

16S sequences

  • @ref: 67770
  • description: Halorubrum salinum strain GX71 16S ribosomal RNA gene, partial sequence
  • accession: HM063951
  • length: 1470
  • database: ena
  • NCBI tax ID: 767517

GC content

  • @ref: 67770
  • GC-content: 67.1
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 67770

culture collection no.: JCM 17093, CGMCC 1.10458

literature

  • topic: Phylogeny
  • Pubmed-ID: 24643450
  • title: Halorubrum salinum sp. nov., isolated from a marine solar saltern.
  • authors: Zhang WJ, Cui HL
  • journal: Arch Microbiol
  • DOI: 10.1007/s00203-014-0975-1
  • year: 2014
  • mesh: Anti-Bacterial Agents/pharmacology, China, Halorubrum/chemistry/*classification/drug effects/isolation & purification/*physiology, Hydrogen-Ion Concentration, Lipids/analysis, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/metabolism, Species Specificity
  • topic2: Genetics

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/