General

@ref: 67770

BacDive-ID: 161890

keywords: 16S sequence, Bacteria, mesophilic

description: Halomonas cibimaris JCM 16914 is a mesophilic bacterium that was isolated from Jeotgal, a traditional Korean fermented seafood.

NCBI tax id

• NCBI tax id: 657012
• Matching level: species

strain history

• @ref: 67770
• history: C. O. Jeon 10-C-3.

doi: 10.13145/bacdive161890.20241212.9.2

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Gammaproteobacteria
• order: Oceanospirillales
• family: Halomonadaceae
• genus: Halomonas
• species: Halomonas cibimaris
• full scientific name: Halomonas cibimaris Jeong et al. 2013

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas cibimaris

full scientific name: Halomonas cibimaris Jeong et al. 2013

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 30

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: Q-9

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Jeotgal, a traditional Korean fermented seafood

taxonmaps

• @ref: 69479
• File name: preview.99_67210.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_25991;97_36605;98_47376;99_67210&stattab=map
• Last taxonomy: Halomonas cibimaris subclade
• 16S sequence: GQ232738
• Sequence Identity:
• Total samples: 255
• soil counts: 12
• aquatic counts: 200
• animal counts: 32
• plant counts: 11

Sequence information

16S sequences

• @ref: 67770
• description: Halomonas cibimaris strain 10-C-3 16S ribosomal RNA gene, partial sequence
• accession: GQ232738
• length: 1454
• database: nuccore
• NCBI tax ID: 657012

GC content

• @ref: 67770
• GC-content: 63.2
• method: thermal denaturation, midpoint method (Tm)

External links

@ref: 67770

culture collection no.: JCM 16914, KACC 14932

literature

• topic: Phylogeny
• Pubmed-ID: 23097017
• title: Halomonas cibimaris sp. nov., isolated from jeotgal, a traditional Korean fermented seafood.
• authors: Jeong SH, Lee JH, Jung JY, Lee SH, Park MS, Jeon CO
• journal: Antonie Van Leeuwenhoek
• DOI: 10.1007/s10482-012-9832-x
• year: 2012
• mesh: Aerobiosis, Anaerobiosis, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Halomonas/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Korea, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Phylogeny, Pigments, Biological/metabolism, RNA, Ribosomal, 16S/genetics, Seafood/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Ubiquinone/analysis
• topic2: Metabolism

Reference