Strain identifier
BacDive ID: 161808
Type strain: 
Species: Pseudomonas alkylphenolica
Strain history: K. Lee KL28.
NCBI tax ID(s): 237609 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 161808
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Pseudomonas alkylphenolica JCM 16553 is a mesophilic bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 237609
- Matching level: species
strain history
- @ref: 67770
- history: K. Lee KL28.
doi: 10.13145/bacdive161808.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas alkylphenolica
- full scientific name: Pseudomonas alkylphenolica Mulet et al. 2015
synonyms
- @ref: 20215
- synonym: Pseudomonas alkylphenolia
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas alkylphenolica
full scientific name: Pseudomonas alkylphenolica Mulet et al. 2016
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil
- geographic location: Changwon
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Pseudomonas alkylphenolica strain KL28 16S ribosomal RNA gene, partial sequence
- accession: AY324319
- length: 1453
- database: nuccore
- NCBI tax ID: 237609
Genome sequences
- @ref: 67770
- description: Pseudomonas alkylphenolica KL28
- accession: GCA_000746525
- assembly level: complete
- database: ncbi
- NCBI tax ID: 237609
GC content
- @ref: 67770
- GC-content: 60.6
- method: genome sequence analysis
External links
@ref: 67770
culture collection no.: JCM 16553, KCTC 22206
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Genetics | 25300744 | Complete genome sequence of the mushroom-like aerial structure-forming Pseudomonas alkylphenolia, a platform bacterium for mass production of poly-beta-d-mannuronates. | Lim JY, Lee K, Hwang I | J Biotechnol | 10.1016/j.jbiotec.2014.09.024 | 2014 | Alginates, Base Sequence, DNA, Bacterial/genetics, *Genome, Bacterial, Glucuronic Acid/biosynthesis, Hexuronic Acids, Molecular Sequence Data, Pseudomonas/*genetics/metabolism, Sequence Analysis, DNA | Transcriptome |
| Phylogeny | 26276124 | Pseudomonas alkylphenolica sp. nov., a bacterial species able to form special aerial structures when grown on p-cresol. | Mulet M, Sanchez D, Lalucat J, Lee K, Garcia-Valdes E | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000529 | 2015 | Bacterial Typing Techniques, Base Composition, *Cresols, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology | Transcriptome |
| Phylogeny | 30798341 | Pseudomonas qingdaonensis sp. nov., an aflatoxin-degrading bacterium, isolated from peanut rhizospheric soil. | Wang MQ, Wang Z, Yu LN, Zhang CS, Bi J, Sun J | Arch Microbiol | 10.1007/s00203-019-01636-w | 2019 | Aflatoxin B1/*metabolism, Arachis/*microbiology, Bacterial Typing Techniques, Base Composition/genetics, Catalase/analysis, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, Bacterial, Multilocus Sequence Typing, Nucleic Acid Hybridization, Oxidoreductases/analysis, Phospholipids/analysis, Phylogeny, Pseudomonas/*classification/genetics/isolation & purification/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology | Metabolism |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |