Strain identifier
BacDive ID: 161796
Type strain: 
Species: Phocaeicola sartorii
Strain history: M. Kitahara ST180.
NCBI tax ID(s): 671267 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161796
keywords: 16S sequence, Bacteria, mesophilic
description: Phocaeicola sartorii JCM 16498 is a mesophilic bacterium that was isolated from Chinchilla feces.
NCBI tax id
- NCBI tax id: 671267
- Matching level: species
strain history
- @ref: 67770
- history: M. Kitahara ST180.
doi: 10.13145/bacdive161796.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Bacteroidaceae
- genus: Phocaeicola
- species: Phocaeicola sartorii
- full scientific name: Phocaeicola sartorii (Clavel et al. 2010) García-López et al. 2020
synonyms
@ref synonym 20215 Bacteroides chinchillae 20215 Phocaeicola chinchillae 20215 Bacteroides sartorii
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Bacteroidaceae
genus: Phocaeicola
species: Phocaeicola sartorii
full scientific name: Phocaeicola sartorii (Clavel et al. 2010) Garc¡a-L¢pez et al. 2020
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Chinchilla feces
taxonmaps
- @ref: 69479
- File name: preview.99_7372.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_21;96_3450;97_4233;98_5406;99_7372&stattab=map
- Last taxonomy: Phocaeicola sartorii subclade
- 16S sequence: AB531491
- Sequence Identity:
- Total samples: 121989
- soil counts: 1570
- aquatic counts: 3072
- animal counts: 116898
- plant counts: 449
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Bacteroides chinchillae gene for 16S rRNA, partial sequence, strain: JCM 16498 | AB531491 | 1489 | ena | 671267 |
| 67770 | Bacteroides chinchillae gene for 16S ribosomal RNA, partial sequence | AB547637 | 1490 | ena | 671267 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 67770 | 44.4 | high performance liquid chromatography (HPLC) |
| 67770 | 45.4 | high performance liquid chromatography (HPLC) |
External links
@ref: 67770
culture collection no.: JCM 16498
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |