Strain identifier
BacDive ID: 16179
Type strain:
Species: Streptomyces decoyicus
Strain history: CIP <- 2000, IFO <- NRRL
NCBI tax ID(s): 249567 (species)
General
@ref: 10291
BacDive-ID: 16179
DSM-Number: 41427
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped, antibiotic compound production
description: Streptomyces decoyicus DSM 41427 is an obligate aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.
NCBI tax id
- NCBI tax id: 249567
- Matching level: species
strain history
@ref | history |
---|---|
10291 | <- NRRL |
67770 | KCC S-0550 <-- NRRL 2666. |
118862 | CIP <- 2000, IFO <- NRRL |
doi: 10.13145/bacdive16179.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces decoyicus
- full scientific name: Streptomyces decoyicus (Vavra et al. 1959) Kumar and Goodfellow 2010
synonyms
- @ref: 20215
- synonym: Streptomyces hygroscopicus subsp. decoyicus
@ref: 10291
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces decoyicus
full scientific name: Streptomyces decoyicus (Vavra et al. 1959) Kumar and Goodfellow 2010
type strain: yes
Morphology
cell morphology
- @ref: 118862
- gram stain: positive
- cell shape: rod-shaped
- motility: no
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
19818 | Green brown | 10-14 days | ISP 2 |
19818 | Grey yellow | 10-14 days | ISP 3 |
19818 | Umber grey | 10-14 days | ISP 4 |
19818 | Ivory | 10-14 days | ISP 5 |
19818 | Sand yellow | 10-14 days | ISP 6 |
19818 | Ivory | 10-14 days | ISP 7 |
118862 |
multicellular morphology
@ref | forms multicellular complex | complex name | complex color | medium name |
---|---|---|---|---|
19818 | yes | Aerial Mycelium | Stone grey (7030) | ISP 2 |
19818 | yes | Aerial Mycelium | Stone grey (7030) | ISP 3 |
19818 | yes | Aerial Mycelium | Sepia brown (8014) | ISP 4 |
19818 | yes | Aerial Mycelium | Signal white (9003) | ISP 5 |
19818 | no | ISP 6 | ||
19818 | yes | Aerial Mycelium | Signal white (9003) | ISP 7 |
pigmentation
- @ref: 29391
- production: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
10291 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
19818 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
19818 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
19818 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
19818 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
19818 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
19818 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
39594 | MEDIUM 128 - for Nocardia brevicatena, Nocardia flavorosea subsp. fusca and Streptomyces ambofaciens | yes | Distilled water make up to (1000.000 ml);Maltose (10.000 g);Agar (20.000g);Yeast extract (1.000 g);Beef extract (1.000 g);Casamino acids (2.000 g) | |
118862 | CIP Medium 129 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=129 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
29391 | positive | growth | 37 | mesophilic |
10291 | positive | growth | 28 | mesophilic |
19818 | positive | optimum | 28 | mesophilic |
39594 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
118862 | positive | growth | 25-37 | mesophilic |
118862 | no | growth | 10 | psychrophilic |
118862 | no | growth | 41 | thermophilic |
118862 | no | growth | 45 | thermophilic |
culture pH
- @ref: 29391
- ability: positive
- type: growth
- pH: 09-10
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 118862
- oxygen tolerance: obligate aerobe
spore formation
- @ref: 29391
- spore formation: yes
compound production
@ref | compound |
---|---|
10291 | angustmycin A |
10291 | decoyinin |
10291 | psicofuranine |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
29391 | NaCl | positive | growth | 13 % |
118862 | NaCl | positive | growth | 0-10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
19818 | 62968 | cellulose | - | |
19818 | 16634 | raffinose | - | |
19818 | 26546 | rhamnose | - | |
19818 | 28757 | fructose | + | |
19818 | 29864 | mannitol | - | |
19818 | 17268 | myo-inositol | + | |
19818 | 18222 | xylose | - | |
19818 | 17992 | sucrose | + | |
19818 | 22599 | arabinose | - | |
19818 | 17234 | glucose | + | |
29391 | 18403 | L-arabitol | + | carbon source |
29391 | 17057 | cellobiose | + | carbon source |
29391 | 23652 | dextrin | + | carbon source |
29391 | 28757 | fructose | + | carbon source |
29391 | 33984 | fucose | + | carbon source |
29391 | 28260 | galactose | + | carbon source |
29391 | 29987 | glutamate | + | carbon source |
29391 | 28087 | glycogen | + | carbon source |
29391 | 25017 | leucine | + | carbon source |
29391 | 17268 | myo-inositol | + | carbon source |
29391 | 26271 | proline | + | carbon source |
29391 | 33942 | ribose | + | carbon source |
29391 | 18222 | xylose | + | carbon source |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | + | builds acid from |
68371 | 17992 | sucrose | - | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 17306 | maltose | - | builds acid from |
68371 | 17057 | cellobiose | - | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | + | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | + | builds acid from |
68371 | 16899 | D-mannitol | + | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | - | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | + | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 16988 | D-ribose | + | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
118862 | 16947 | citrate | - | carbon source |
118862 | 4853 | esculin | + | hydrolysis |
118862 | 606565 | hippurate | - | hydrolysis |
118862 | 17632 | nitrate | - | reduction |
118862 | 16301 | nitrite | - | reduction |
118862 | 17632 | nitrate | - | respiration |
antibiotic resistance
- @ref: 118862
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite production
@ref | metabolite | production | Chebi-ID |
---|---|---|---|
67770 | decoyinine | yes | |
67770 | psicofuranine | yes | |
118862 | indole | no | 35581 |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
118862 | 15688 | acetoin | - | |
118862 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
118862 | oxidase | - | |
118862 | beta-galactosidase | + | 3.2.1.23 |
118862 | alcohol dehydrogenase | - | 1.1.1.1 |
118862 | gelatinase | +/- | |
118862 | amylase | + | |
118862 | DNase | - | |
118862 | caseinase | - | 3.4.21.50 |
118862 | catalase | + | 1.11.1.6 |
118862 | tween esterase | - | |
118862 | gamma-glutamyltransferase | + | 2.3.2.2 |
118862 | lecithinase | - | |
118862 | lipase | - | |
118862 | lysine decarboxylase | - | 4.1.1.18 |
118862 | ornithine decarboxylase | - | 4.1.1.17 |
118862 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
118862 | tryptophan deaminase | - | |
118862 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19818 | + | + | + | + | + | + | + | + | + | + | + | - | - | - | - | - | + | + | - | |
118862 | + | + | + | - | + | + | + | + | + | + | + | - | + | - | - | - | + | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118862 | +/- | - | - | - | + | - | - | + | - | + | + | + | - | - | - | +/- | - | + | + | - | - | + | - | - | +/- | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
118862 | + | + | + | + | + | - | - | + | - | + | + | - | + | - | - | - | - | - | + | + | - | - | + | - | - | + | + | - | + | - | - | + | + | + | + | + | + | + | - | - | - | + | - | - | - | - | - | - | - | + | + | - | - | + | - | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | - | + | + | - | + | - | - | + | + | + | - | - | - | + | - | - | - | + | + | + | + | + | + | + | - | - | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
10291 | garden soil | California, Verdings City | USA | USA | North America |
67770 | Garden soil | Verdings City, CA | USA | USA | North America |
118862 | Environment, Garden soils | Verdings, California | United States of America | USA | North America |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Engineered | #Agriculture | #Garden |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
10291 | 1 | Risk group (German classification) |
118862 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces decoyicus gene for 16S rRNA, partial sequence | AB122753 | 565 | ena | 249567 |
20218 | Streptomyces decoyicus gene for 16S rRNA, partial sequence, strain: NBRC 13977 | AB184557 | 1480 | ena | 249567 |
20218 | Streptomyces decoyicus strain AS 4.1861 16S ribosomal RNA gene, partial sequence | AY999883 | 1419 | ena | 249567 |
10291 | Streptomyces decoyicus strain NRRL 2666 16S ribosomal RNA gene, partial sequence | EU170127 | 1451 | ena | 249567 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces decoyicus NRRL 2666 | GCA_019880305 | complete | ncbi | 249567 |
66792 | Streptomyces decoyicus strain NRRL 2666 | 249567.6 | wgs | patric | 249567 |
66792 | Streptomyces decoyicus strain NRRL 2666 | 249567.7 | complete | patric | 249567 |
66792 | Streptomyces decoyicus NRRL 2666 | 2765236007 | draft | img | 249567 |
67770 | Streptomyces decoyicus NRRL ISP-5087 | GCA_000715775 | scaffold | ncbi | 249567 |
67770 | Streptomyces decoyicus NRRL 2666 | GCA_001270575 | contig | ncbi | 249567 |
66792 | Streptomyces decoyicus strain NRRL 2666 | 249567.10 | complete | patric | 249567 |
66792 | Streptomyces decoyicus strain NRRL 2666 | 249567.9 | complete | patric | 249567 |
66792 | Streptomyces decoyicus strain NRRL 2666 | 249567.8 | complete | patric | 249567 |
GC content
- @ref: 10291
- GC-content: 71.2
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 98.279 | no |
gram-positive | yes | 90.423 | no |
anaerobic | no | 99.138 | no |
aerobic | yes | 93.081 | no |
halophile | no | 88.419 | yes |
spore-forming | yes | 96.158 | yes |
motile | no | 93.727 | no |
thermophile | no | 98.236 | no |
glucose-util | yes | 91.507 | yes |
glucose-ferment | no | 91.338 | no |
External links
@ref: 10291
culture collection no.: DSM 41427, AS 4.1861, IFO 13977, JCM 4550, KCC S-0550, NBRC 13977, NCIB 9752, NRRL 2666, CGMCC 4.1861, CGMCC 4.1915, CIP 106836, NCIMB 10502, NCIMB 9752, NRRL ISP-5087
straininfo link
- @ref: 85242
- straininfo: 49994
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19656929 | Reclassification of Streptomyces hygroscopicus strains as Streptomyces aldersoniae sp. nov., Streptomyces angustmyceticus sp. nov., comb. nov., Streptomyces ascomycinicus sp. nov., Streptomyces decoyicus sp. nov., comb. nov., Streptomyces milbemycinicus sp. nov. and Streptomyces wellingtoniae sp. nov. | Kumar Y, Goodfellow M | Int J Syst Evol Microbiol | 10.1099/ijs.0.012161-0 | 2009 | Bacterial Typing Techniques, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Soil Microbiology, Species Specificity, Streptomyces/*classification/genetics/metabolism/physiology | Genetics |
Phylogeny | 29111972 | Streptomyces capitiformicae sp. nov., a novel actinomycete producing angucyclinone antibiotics isolated from the head of Camponotus japonicus Mayr. | Jiang S, Piao C, Yu Y, Cao P, Li C, Yang F, Li M, Xiang W, Liu C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002468 | 2017 | Animals, Anthraquinones/*metabolism, Anti-Bacterial Agents/biosynthesis, Ants/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification | Transcriptome |
Enzymology | 31516066 | GABA enzymatic assay kit. | Nishiyama T, Sulistyaningdyah WT, Ueda K, Kusakabe H | Biosci Biotechnol Biochem | 10.1080/09168451.2019.1661768 | 2019 | 4-Aminobutyrate Transaminase/*chemistry, Amino Acid Oxidoreductases/*chemistry, Ampyrone/chemistry, Ascorbate Oxidase/chemistry, Catalase/chemistry, Chromatography, Liquid, Colorimetry/*methods, Enzyme Assays/economics/*methods, Ferric Compounds/chemistry, Glutamic Acid/chemistry, Hydrogen Peroxide/chemistry, Lycopersicon esculentum/chemistry, Oxidative Coupling, Peroxidase/*chemistry, Recombinant Proteins, Streptomyces/enzymology, Tandem Mass Spectrometry, gamma-Aminobutyric Acid/*analysis | Proteome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
---|---|---|---|---|---|---|---|
10291 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41427) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41427 | ||||
19818 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM41427.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
29391 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 25798 | ||
39594 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/19010 | |||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
68371 | Automatically annotated from API 50CH acid | ||||||
68382 | Automatically annotated from API zym | ||||||
85242 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49994.1 | StrainInfo: A central database for resolving microbial strain identifiers | ||||
118862 | Curators of the CIP | Collection of Institut Pasteur (CIP 106836) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106836 |