Strain identifier

BacDive ID: 16170

Type strain: No

Species: Streptomyces olivoverticillatus

Strain history: CIP <- 2003, JCM <- 1983, KCC <- NRRL <- IMRU: strain 3685

NCBI tax ID(s): 173862 (species)

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General

@ref: 9397

BacDive-ID: 16170

DSM-Number: 40237

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Streptomyces olivoverticillatus DSM 40237 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Streptomycetaceae.

NCBI tax id

  • NCBI tax id: 173862
  • Matching level: species

strain history

@refhistory
9397<- E.B. Shirling (Streptoverticillium viridoflavum) <- S.A. Waksman, IMRU
67770KCC S-0221 <-- NRRL B-1569 <-- IMRU 3685.
123866CIP <- 2003, JCM <- 1983, KCC <- NRRL <- IMRU: strain 3685

doi: 10.13145/bacdive16170.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces olivoverticillatus
  • full scientific name: Streptomyces olivoverticillatus (Shinobu 1956) Witt and Stackebrandt 1991

  • synonyms

    @refsynonym
    20215Streptomyces olivoverticillatus
    20215Streptoverticillium olivoverticillatum
    20215Streptoverticillium viridoflavum
    20215Streptomyces viridoflavum
    20215Streptomyces viridiflavus

@ref: 9397

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces olivoverticillatus

full scientific name: Streptomyces olivoverticillatus (Shinobu 1956) Witt and Stackebrandt 1991

type strain: no

Morphology

cell morphology

  • @ref: 123866
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 123866

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9397GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
34677MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulumyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
9397ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
123866CIP Medium 57yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57

culture temp

@refgrowthtypetemperaturerange
9397positivegrowth28mesophilic
18568positiveoptimum28mesophilic
34677positivegrowth30mesophilic
67770positivegrowth28mesophilic
123866positivegrowth10-37
123866nogrowth41thermophilic
123866nogrowth45thermophilic

Physiology and metabolism

tolerance

  • @ref: 18568
  • compound: Lysozyme
  • percentage: 1

oxygen tolerance

  • @ref: 123866
  • oxygen tolerance: obligate aerobe

compound production

  • @ref: 9397
  • compound: candidin

halophily

@refsaltgrowthtested relationconcentration
18568NaClpositivemaximum2.5 %
123866NaClpositivegrowth0 %
123866NaClnogrowth2 %
123866NaClnogrowth4 %
123866NaClnogrowth6 %
123866NaClnogrowth8 %
123866NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
68368gelatin+hydrolysis5291
68368tryptophan-energy source27897
68368urea+hydrolysis16199
68368citrate-assimilation16947
68368ornithine-degradation18257
68368lysine-degradation25094
68368arginine-hydrolysis29016
123866citrate-carbon source16947
123866esculin+hydrolysis4853
123866hippurate+hydrolysis606565
123866nitrate+reduction17632
123866nitrite-reduction16301
123866nitrate-respiration17632

antibiotic resistance

  • @ref: 123866
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno
12386635581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin+
6836835581indole-
12386615688acetoin-
12386617234glucose-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
123866oxidase-
123866beta-galactosidase-3.2.1.23
123866alcohol dehydrogenase-1.1.1.1
123866gelatinase+
123866amylase+
123866caseinase+3.4.21.50
123866catalase+1.11.1.6
123866tween esterase+
123866gamma-glutamyltransferase+2.3.2.2
123866lecithinase+
123866lipase-
123866lysine decarboxylase-4.1.1.18
123866ornithine decarboxylase-4.1.1.17
123866phenylalanine ammonia-lyase-4.3.1.24
123866tryptophan deaminase-
123866urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123866-+++-+++-+++---+----

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18568------+--++

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123866-----------------+/--------------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123866+-++-----+---------------------+-----------------+---------+------------++-----++--------+++-++----

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
93971Risk group (German classification)
185681German classification
1238661Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces viridiflavus gene for 16S rRNA, partial sequence, strain: NBRC 13351AB1843481474ena173862
67770Streptomyces viridiflavus gene for 16S rRNA, partial sequence, strain: NBRC 15799AB1847021449ena173862
67770Streptomyces viridoflavus 16S rRNA gene, type strain LMG 20277AJ7813631476ena173862
67770Streptomyces viridiflavus strain IFO 15799 16S ribosomal RNA gene, partial sequenceAY9998471418ena173862

External links

@ref: 9397

culture collection no.: DSM 40237, ATCC 12631, CBS 652.72, ETH 14323, ETH 24306, IFO 13351, IMRU 3685, ISP 5237, JCM 4221, JCM 4857, NBRC 13351, NRRL B-1569, RIA 1312, BCRC 15105, CIP 108139, IFO 15799, NBRC 15799, NRRL B-1548, KCC S-0221

straininfo link

  • @ref: 85235
  • straininfo: 297040

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9397Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40237)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40237
18568Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40237.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34677Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5728
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
85235Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297040.1StrainInfo: A central database for resolving microbial strain identifiers
123866Curators of the CIPCollection of Institut Pasteur (CIP 108139)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108139