Strain identifier

BacDive ID: 161631

Type strain: No

Species: Propioniciclava tarda

Strain history: A. Ueki WR054.

NCBI tax ID(s): 433330 (species)

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General

@ref: 67770

BacDive-ID: 161631

keywords: 16S sequence, Bacteria, mesophilic

description: Propioniciclava tarda JCM 15805 is a mesophilic bacterium that was isolated from Rice-straw residue in a methanogenic reactor treating waste from cattle farms.

NCBI tax id

  • NCBI tax id: 433330
  • Matching level: species

strain history

  • @ref: 67770
  • history: A. Ueki WR054.

doi: 10.13145/bacdive161631.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Propioniciclava
  • species: Propioniciclava tarda
  • full scientific name: Propioniciclava tarda Sugawara et al. 2011

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Propionibacteriales

family: Propionibacteriaceae

genus: Propioniciclava

species: Propioniciclava tarda

full scientific name: Propioniciclava tarda Sugawara et al. 2011

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Rice-straw residue in a methanogenic reactor treating waste from cattle farms

taxonmaps

  • @ref: 69479
  • File name: preview.99_134815.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_282;96_24993;97_67281;98_89976;99_134815&stattab=map
  • Last taxonomy: Propioniciclava tarda subclade
  • 16S sequence: AB298730
  • Sequence Identity:
  • Total samples: 2521
  • soil counts: 105
  • aquatic counts: 2132
  • animal counts: 226
  • plant counts: 58

Sequence information

16S sequences

  • @ref: 67770
  • description: Propioniciclava tarda gene for 16S rRNA, partial sequence, strain: WR054
  • accession: AB298730
  • length: 1448
  • database: nuccore
  • NCBI tax ID: 433330

GC content

  • @ref: 67770
  • GC-content: 69.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 15805

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/