Strain identifier
BacDive ID: 161614
Type strain:
Species: Thermaerobacter composti
Strain history: S. Yabe Ni80.
NCBI tax ID(s): 1294259 (strain), 554949 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 161614
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, thermophilic
description: Thermaerobacter composti JCM 15650 is a spore-forming, thermophilic bacterium that was isolated from Food sludge compost.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1294259 | strain |
554949 | species |
strain history
- @ref: 67770
- history: S. Yabe Ni80.
doi: 10.13145/bacdive161614.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Syntrophomonadaceae
- genus: Thermaerobacter
- species: Thermaerobacter composti
- full scientific name: Thermaerobacter composti Yabe et al. 2010
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Syntrophomonadaceae
genus: Thermaerobacter
species: Thermaerobacter composti
full scientific name: Thermaerobacter composti Yabe et al. 2010
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 70
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Food sludge compost
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_76284.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_648;96_3515;97_40936;98_53356;99_76284&stattab=map
- Last taxonomy: Thermaerobacter composti subclade
- 16S sequence: AB454087
- Sequence Identity:
- Total samples: 870
- soil counts: 355
- aquatic counts: 84
- animal counts: 128
- plant counts: 303
Sequence information
16S sequences
- @ref: 67770
- description: Thermaerobacter composti gene for 16S ribosomal RNA, partial sequence
- accession: AB454087
- length: 1566
- database: nuccore
- NCBI tax ID: 1294259
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Thermaerobacter composti JCM 15650 | 1294259.8 | wgs | patric | 1294259 |
66792 | Thermaerobacter composti JCM 15650 | 2728369702 | draft | img | 1294259 |
67770 | Thermaerobacter composti JCM 15650 | GCA_001311965 | contig | ncbi | 1294259 |
GC content
- @ref: 67770
- GC-content: 72
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 54.972 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 67.975 | no |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 76.679 | no |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 55.492 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 58.278 | no |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 73.071 | no |
External links
@ref: 67770
culture collection no.: JCM 15650, ATCC BAA-1731
literature
- topic: Phylogeny
- Pubmed-ID: 19940377
- title: Thermaerobacter composti sp. nov., a novel extremely thermophilic bacterium isolated from compost.
- authors: Yabe S, Kato A, Hazaka M, Yokota A
- journal: J Gen Appl Microbiol
- DOI: 10.2323/jgam.55.323
- year: 2009
- mesh: Bacteria, Aerobic/classification/genetics/*isolation & purification, *Base Composition, DNA, Ribosomal/*analysis, Hot Temperature, Japan, Molecular Sequence Data, RNA, Ribosomal, 16S/*analysis/isolation & purification, Soil
- topic2: Enzymology
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |