Strain identifier

BacDive ID: 161614

Type strain: Yes

Species: Thermaerobacter composti

Strain history: S. Yabe Ni80.

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
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General

@ref: 67770

BacDive-ID: 161614

keywords: genome sequence, 16S sequence, Bacteria, thermophilic, Gram-positive

description: Thermaerobacter composti JCM 15650 is a thermophilic, Gram-positive bacterium that was isolated from Food sludge compost.

NCBI tax id

NCBI tax idMatching level
554949species
1294259strain

strain history

  • @ref: 67770
  • history: S. Yabe Ni80.

doi: 10.13145/bacdive161614.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Syntrophomonadaceae
  • genus: Thermaerobacter
  • species: Thermaerobacter composti
  • full scientific name: Thermaerobacter composti Yabe et al. 2010

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Syntrophomonadaceae

genus: Thermaerobacter

species: Thermaerobacter composti

full scientific name: Thermaerobacter composti Yabe et al. 2010

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 99.719

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 70
  • range: thermophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.997
69481yes100

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Food sludge compost
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_76284.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_648;96_3515;97_40936;98_53356;99_76284&stattab=map
  • Last taxonomy: Thermaerobacter composti subclade
  • 16S sequence: AB454087
  • Sequence Identity:
  • Total samples: 870
  • soil counts: 355
  • aquatic counts: 84
  • animal counts: 128
  • plant counts: 303

Sequence information

16S sequences

  • @ref: 67770
  • description: Thermaerobacter composti gene for 16S ribosomal RNA, partial sequence
  • accession: AB454087
  • length: 1566
  • database: ena
  • NCBI tax ID: 1294259

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thermaerobacter composti JCM 156501294259.8wgspatric1294259
66792Thermaerobacter composti JCM 156502728369702draftimg1294259
67770Thermaerobacter composti JCM 15650GCA_001311965contigncbi1294259

GC content

  • @ref: 67770
  • GC-content: 72
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno67.759no
gram-positiveno65.971no
anaerobicno77.108no
aerobicyes68.142no
halophileno75.518no
spore-formingno89.308no
thermophileyes99.182yes
glucose-utilyes88.186no
flagellatedno96.387no
glucose-fermentno60.355no

External links

@ref: 67770

culture collection no.: JCM 15650, ATCC BAA 1731

literature

  • topic: Phylogeny
  • Pubmed-ID: 19940377
  • title: Thermaerobacter composti sp. nov., a novel extremely thermophilic bacterium isolated from compost.
  • authors: Yabe S, Kato A, Hazaka M, Yokota A
  • journal: J Gen Appl Microbiol
  • DOI: 10.2323/jgam.55.323
  • year: 2009
  • mesh: Bacteria, Aerobic/classification/genetics/*isolation & purification, *Base Composition, DNA, Ribosomal/*analysis, Hot Temperature, Japan, Molecular Sequence Data, RNA, Ribosomal, 16S/*analysis/isolation & purification, Soil
  • topic2: Enzymology

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1