Strain identifier
BacDive ID: 161613
Type strain: 
Species: Halomonas jeotgali
Strain history: J.-W. Bae strain Hwa.
NCBI tax ID(s): 553386 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 161613
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Halomonas jeotgali JCM 15645 is a mesophilic, Gram-negative bacterium that was isolated from Jeotgal, traditional Korean fermented seafood.
NCBI tax id
- NCBI tax id: 553386
- Matching level: species
strain history
- @ref: 67770
- history: J.-W. Bae strain Hwa.
doi: 10.13145/bacdive161613.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Halomonas
- species: Halomonas jeotgali
- full scientific name: Halomonas jeotgali Kim et al. 2011
synonyms
- @ref: 20215
- synonym: Vreelandella jeotgali
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Halomonas
species: Halomonas jeotgali
full scientific name: Halomonas jeotgali Kim et al. 2011
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 97.5 |
| 125439 | negative | 99.4 |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
spore formation
- @ref: 125439
- spore formation: no
- confidence: 99.5
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Jeotgal, traditional Korean fermented seafood
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_26890.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_2497;97_3048;98_3826;99_26890&stattab=map
- Last taxonomy: Halomonas jeotgali subclade
- 16S sequence: EU909458
- Sequence Identity:
- Total samples: 204
- soil counts: 20
- aquatic counts: 49
- animal counts: 108
- plant counts: 27
Sequence information
16S sequences
- @ref: 67770
- description: Halomonas jeotgali strain Hwa 16S ribosomal RNA gene, partial sequence
- accession: EU909458
- length: 1437
- database: nuccore
- NCBI tax ID: 1238190
Genome sequences
- @ref: 67770
- description: Halomonas jeotgali Hwa
- accession: GCA_000334215
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1238190
GC content
- @ref: 67770
- GC-content: 61.7
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.5 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 92.094 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 67.711 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.762 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.118 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 68.511 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 85.6 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.4 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 84.3 |
External links
@ref: 67770
culture collection no.: JCM 15645, KCTC 22487
literature
- topic: Phylogeny
- Pubmed-ID: 20571961
- title: Halomonas jeotgali sp. nov., a new moderate halophilic bacterium isolated from a traditional fermented seafood.
- authors: Kim MS, Roh SW, Bae JW
- journal: J Microbiol
- DOI: 10.1007/s12275-010-0032-y
- year: 2010
- mesh: Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Fermentation, *Food Microbiology, Genes, Bacterial, Genes, rRNA, Halomonas/classification/genetics/*isolation & purification/metabolism, Hydrogen-Ion Concentration, Korea, Phenotype, Phylogeny, Salinity, Seafood/*microbiology, Species Specificity
- topic2: Metabolism
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |