Strain identifier

BacDive ID: 16157

Type strain: No

Species: Streptomyces eurocidicus

Strain history: KCC S-0116 <-- IFO 3400 <-- K. Nakazawa 3724.

NCBI tax ID(s): 1940 (species)

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General

@ref: 9128

BacDive-ID: 16157

DSM-Number: 40051

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces eurocidicus DSM 40051 is a mesophilic bacterium that produces antibiotic compounds and was isolated from Soil.

NCBI tax id

  • NCBI tax id: 1940
  • Matching level: species

strain history

@refhistory
9128<- E.B. Shirling, ISP <- K. Nakazawa 3724
67770KCC S-0116 <-- IFO 3400 <-- K. Nakazawa 3724.

doi: 10.13145/bacdive16157.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces eurocidicus
  • full scientific name: Streptomyces eurocidicus (Okami et al. 1954) Witt and Stackebrandt 1991

  • synonyms

    @refsynonym
    20215Streptoverticillium eurocidicum
    20215Streptomyces albireticuli
    20215Streptoverticillium albireticuli
    20215Streptomyces eurocidicus

@ref: 9128

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces eurocidicus

full scientific name: Streptomyces eurocidicus (Okami et al. 1954) Witt and Stackebrandt 1991

type strain: no

Culture and growth conditions

culture medium

  • @ref: 9128
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9128positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
9128magnamycin
9128enteromycin
9128eurocidin
9128tertiomycine A

metabolite production

@refmetaboliteproduction
67770carbomycinyes
67770enteromycinyes
67770eurocidinyes

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil
  • geographic location: Jakarta, Java
  • country: Indonesia
  • origin.country: IDN
  • continent: Asia

Safety information

risk assessment

  • @ref: 9128
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces albireticuli gene for 16S rRNA, partial sequence, strain: NBRC 12737AB1848811475ena1940
20218Streptomyces albireticuli strain JCM 4116 16S ribosomal RNA gene, partial sequenceAY9997481432ena1940
20218Streptomyces albireticuli gene for 16S ribosomal RNA, partial sequence, strain: JCM 4116D44009120ena1940

Genome sequences

  • @ref: 67770
  • description: Streptomyces albireticuli NRRL B-1670
  • accession: GCA_002286695
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1940

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.988no
gram-positiveyes87.607no
anaerobicno99.262no
aerobicyes90.176no
halophileno94.029no
spore-formingyes93.883no
glucose-utilyes92.11no
thermophileno96.451no
motileno92.94no
glucose-fermentno90.251no

External links

@ref: 9128

culture collection no.: DSM 40051, ATCC 19721, CBS 460.68, IFO 12737, ISP 5051, JCM 4116, NBRC 12737, RIA 1002, BCRC 12427, CECT 3253, CGMCC 4.1649, HUT 6040, IFM 1068, IFO 3400, JCM 4562, KCTC 9685, MTCC 323, NBRC 3400, NCIMB 9600, NRRL B-1670, NRRL B-5493

straininfo link

  • @ref: 85222
  • straininfo: 37087

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9128Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40051)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40051
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
85222Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID37087.1StrainInfo: A central database for resolving microbial strain identifiers