Strain identifier
BacDive ID: 161552
Type strain: 
Species: Microbacterium terricola
Strain history: NBRC 101801 <-- S. ?mura KV-448.
NCBI tax ID(s): 344163 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 161552
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Microbacterium terricola JCM 14903 is a mesophilic bacterium that was isolated from Soil form a cemetery in Aoyama.
NCBI tax id
- NCBI tax id: 344163
- Matching level: species
strain history
- @ref: 67770
- history: NBRC 101801 <-- S. ?mura KV-448.
doi: 10.13145/bacdive161552.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Microbacterium
- species: Microbacterium terricola
- full scientific name: Microbacterium terricola corrig. Kageyama et al. 2007
synonyms
- @ref: 20215
- synonym: Microbacterium terricolae
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Microbacteriaceae
genus: Microbacterium
species: Microbacterium terricola
full scientific name: Microbacterium terricola Kageyama et al. 2007
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | positive | 98.3 | |
| 125438 | 93 | no | |
| 125438 | positive | 90.723 |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 99.6
observation
- @ref: 67770
- observation: quinones: MK-12, MK-13
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil form a cemetery in Aoyama
- geographic location: Tokyo
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Microbacterium terricola gene for 16S rRNA, partial sequence
- accession: AB234025
- length: 1434
- database: nuccore
- NCBI tax ID: 344163
Genome sequences
- @ref: 66792
- description: Microbacterium terricola JCM 14903
- accession: GCA_025758395
- assembly level: complete
- database: ncbi
- NCBI tax ID: 344163
GC content
- @ref: 67770
- GC-content: 70
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 90.723 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.257 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.16 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 81.772 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 94.929 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 93 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 81.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 57.3 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 98.3 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.6 |
External links
@ref: 67770
culture collection no.: JCM 14903, NBRC 101801, NRRL B-24468
literature
- topic: Phylogeny
- Pubmed-ID: 17429156
- title: Microbacterium terricolae sp. nov., isolated from soil in Japan.
- authors: Kageyama A, Takahashi Y, Omura S
- journal: J Gen Appl Microbiol
- DOI: 10.2323/jgam.53.1
- year: 2007
- mesh: Actinomycetales/classification/genetics/*isolation & purification, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology
- topic2: Enzymology
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |