Archive BacDiveID:10.13145/bacdive161509.20241212.9.2

Strain identifier

BacDive ID: 161509

Type strain:

Species: Natrinema gari

Strain history: W. Visessanguan HDS3-1.

NCBI tax ID(s): 419186 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 67770

BacDive-ID: 161509

keywords: 16S sequence, Archaea, mesophilic

description: Natrinema gari JCM 14665 is a mesophilic archaeon that was isolated from Anchovy fish sauce produced in Thailand.

NCBI tax id

NCBI tax id: 419186
Matching level: species

strain history

@ref: 67770
history: W. Visessanguan HDS3-1.

doi: 10.13145/bacdive161509.20241212.9.2

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/archaea
keyword: phylum/methanobacteriota
domain: Archaea
phylum: Methanobacteriota
class: Halobacteria
order: Halobacteriales
family: Natrialbaceae
genus: Natrinema
species: Natrinema gari
full scientific name: Natrinema gari Tapingkae et al. 2008

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Natrialbales

family: Natrialbaceae

genus: Natrinema

species: Natrinema gari

full scientific name: Natrinema gari Tapingkae et al. 2008

type strain: no

Culture and growth conditions

culture temp

@ref: 67770
growth: positive
type: growth
temperature: 37

Physiology and metabolism

observation

@ref: 67770
observation: quinones: MK-8, MK-8(H₂)

Isolation, sampling and environmental information

isolation

@ref: 67770
sample type: Anchovy fish sauce (nam-pla) produced in Thailand

taxonmaps

@ref: 69479
File name: preview.99_187636.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17652;96_69120;97_89802;98_122117;99_187636&stattab=map
Last taxonomy: Natrinema
16S sequence: AB289743
Sequence Identity:
Total samples: 1
aquatic counts: 1

Sequence information

16S sequences

@ref: 67770
description: Natrinema gari gene for 16S ribosomal RNA, partial sequence, strain: HDS3-1
accession: AB289743
length: 1353
database: nuccore
NCBI tax ID: 419186

GC content

@ref: 67770
GC-content: 64
method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 14665, BCC 24369

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Enzymology	25005094	Crystallization and preliminary crystallographic analysis of histamine dehydrogenase from Natrinema gari BCC 24369.	Zhou D, Visessanguan W, Chaikaew S, Benjakul S, Oda K, Wlodawer A	Acta Crystallogr F Struct Biol Commun	10.1107/S2053230X14011327	2014	Archaeal Proteins/chemistry/genetics/isolation & purification/metabolism, Crystallization, Crystallography, X-Ray, Gene Expression, Halobacteriaceae/chemistry/enzymology/genetics, Molecular Weight, Oxidoreductases Acting on CH-NH Group Donors/chemistry/genetics/isolation & purification/metabolism, Protein Multimerization, Protein Subunits/chemistry/genetics/isolation & purification/metabolism	Phylogeny
Enzymology	26782653	Enhanced production of histamine dehydrogenase by Natrinema gari BCC 24369 in a non-sterile condition.	Chaikaew S, Powtongsook S, Boonpayung S, Benjakul S, Visessanguan W	J Gen Appl Microbiol	10.2323/jgam.61.232	2015	Culture Media/chemistry, Euryarchaeota/enzymology/growth & development, Hydrogen-Ion Concentration, Oxidoreductases Acting on CH-NH Group Donors/metabolism, Temperature	Biotechnology

Reference

@id	authors	title	doi/url
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/