Strain identifier
BacDive ID: 16149
Type strain: 
Species: Streptomyces cinnamoneus
Strain Designation: H-2609
Strain history: KCC S-0331 <-- H. Nonomura <-- ISP 5114 <-- T. Yamaguchi H-2609.
NCBI tax ID(s): 66899 (species)
version 8.1 (current version)
General
@ref: 9324
BacDive-ID: 16149
DSM-Number: 40114
keywords: 16S sequence, Bacteria, mesophilic, antibiotic compound production
description: Streptomyces cinnamoneus H-2609 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
- NCBI tax id: 66899
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9324 | <- E.B. Shirling, ISP (Streptomyces hachijoense) <- T. Yamaguchi, H-2609 |
| 67770 | KCC S-0331 <-- H. Nonomura <-- ISP 5114 <-- T. Yamaguchi H-2609. |
doi: 10.13145/bacdive16149.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces cinnamoneus
- full scientific name: Streptomyces cinnamoneus (Benedict et al. 1952) Witt and Stackebrandt 1991
synonyms
@ref synonym 20215 Streptomyces sapporonensis 20215 Streptomyces cinnamoneus 20215 Streptomyces griseoverticillatus 20215 Streptoverticillium griseoverticillatum 20215 Streptomyces hachijoensis 20215 Streptoverticillium cinnamoneum 20215 Streptoverticillium hachijoense 20215 Streptoverticillium sapporonense
@ref: 9324
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces cinnamoneus subsp. cinnamoneus
full scientific name: Streptomyces cinnamoneus subsp. cinnamoneus (Benedict et al. 1952) Witt and Stackebrandt 1991
strain designation: H-2609
type strain: no
Morphology
multimedia
- @ref: 9324
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40114.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 9324
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9324 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
| @ref | compound |
|---|---|
| 9324 | trichomycin A, B, C |
| 9324 | nucleotide pyrophosphotransferase |
| 9324 | aminocyclase |
metabolite production
- @ref: 67770
- Chebi-ID: 35022
- metabolite: trichomycin
- production: yes
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|
| 9324 | soil | Japan | JPN | Asia | |
| 67770 | Soil | Japan | JPN | Asia | Hachijo Island, Tokyo |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 9324
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces hachijoensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4331 | D44054 | 120 | ena | 66899 |
| 20218 | Streptomyces hachijoensis strain NRRL B-3106 16S ribosomal RNA gene, partial sequence | EF178694 | 1488 | ena | 66899 |
| 67770 | Streptomyces hachijoensis gene for 16S rRNA, partial sequence, strain: NBRC 12782 | AB184141 | 1456 | ena | 66899 |
GC content
- @ref: 67770
- GC-content: 72.1
External links
@ref: 9324
culture collection no.: DSM 40114, ATCC 19769, CBS 507.68, DSM 2011, IFO 12782, ISP 5114, JCM 4331, JCM 4583, NRRL B-3106, RIA 1049, BCRC 12419, CECT 3260, CGMCC 4.1951, NBIMCC 3393, NBRC 12782, NCB 128, VKM Ac-191
straininfo link
- @ref: 85214
- straininfo: 125784
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 2125590 | Duramycins B and C, two new lanthionine containing antibiotics as inhibitors of phospholipase A2. Structural revision of duramycin and cinnamycin. | Fredenhagen A, Fendrich G, Marki F, Marki W, Gruner J, Raschdorf F, Peter HH | J Antibiot (Tokyo) | 10.7164/antibiotics.43.1403 | 1990 | Amino Acid Sequence, Amino Acids/analysis, *Anti-Bacterial Agents/*chemistry/isolation & purification/*pharmacology, Antimicrobial Cationic Peptides, Bacillus subtilis/drug effects, Bacteriocins, Chromatography, High Pressure Liquid, Humans, Magnetic Resonance Spectroscopy, Mass Spectrometry, Molecular Sequence Data, Molecular Structure, Neutrophils/enzymology, Peptides/chemistry/isolation & purification/*pharmacology, *Peptides, Cyclic, Phospholipases A/*antagonists & inhibitors, Phospholipases A2, Protein Conformation, Stereoisomerism, Streptomyces/classification/metabolism, Streptomycetaceae/classification/metabolism, Structure-Activity Relationship | Enzymology |
| 10395983 | Anionic carbohydrate-containing polymers of cell walls in two streptoverticille genospecies. | Kozlova YI, Streshinskaya GM, Shashkov AS, Evtushenko LI, Naumova IB | Biochemistry (Mosc) | BCM64060805 | 1999 | Carbohydrates/*chemistry, Cell Wall/*chemistry, Magnetic Resonance Spectroscopy, Polymers/*chemistry, Streptomyces/*chemistry |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9324 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40114) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40114 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 85214 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID125784.1 | StrainInfo: A central database for resolving microbial strain identifiers |