Strain identifier

BacDive ID: 16148

Type strain: Yes

Species: Streptomyces cinnamoneus

Strain Designation: A-725

Strain history: CIP <- 2003, JCM <- 1983, KCC <- IFO <- SAJ <- ISP <- NRRL <- R.G. Benedict: strain A-725

NCBI tax ID(s): 53446 (species)

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General

@ref: 9210

BacDive-ID: 16148

DSM-Number: 40005

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces cinnamoneus A-725 is an obligate aerobe, spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 53446
  • Matching level: species

strain history

@refhistory
9210<- E. B. Shirling, ISP <- NRRL <- R. G. Benedict, A-725
67770KCC S-0152 <-- R. Shinobu <-- NRRL B-1285 <-- R. G. Benedict A-725.
118289CIP <- 2003, JCM <- 1983, KCC <- IFO <- SAJ <- ISP <- NRRL <- R.G. Benedict: strain A-725

doi: 10.13145/bacdive16148.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces cinnamoneus
  • full scientific name: Streptomyces cinnamoneus (Benedict et al. 1952) Witt and Stackebrandt 1991

  • synonyms

    @refsynonym
    20215Streptomyces sapporonensis
    20215Streptomyces cinnamoneus
    20215Streptomyces griseoverticillatus
    20215Streptoverticillium griseoverticillatum
    20215Streptomyces hachijoensis
    20215Streptoverticillium cinnamoneum
    20215Streptoverticillium hachijoense
    20215Streptoverticillium sapporonense

@ref: 9210

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces cinnamoneus subsp. cinnamoneus

full scientific name: Streptomyces cinnamoneus subsp. cinnamoneus (Benedict et al. 1952) Witt and Stackebrandt 1991

strain designation: A-725

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no95.458
69480100positive
118289nopositiverod-shaped

colony morphology

  • @ref: 118289

multimedia

  • @ref: 9210
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40005.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9210GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
36995MEDIUM 56 - for Micromonospora purpureayesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (10.000g);Yeast extract (5.000 g);Starch maize (20.000 g);Calcium carbonate (1.000 g);Casamino acids (5.000 g)
9210ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
118289CIP Medium 56yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=56

culture temp

@refgrowthtypetemperaturerange
9210positivegrowth28mesophilic
36995positivegrowth30mesophilic
67770positivegrowth28mesophilic
118289positivegrowth25-37mesophilic
118289nogrowth10psychrophilic
118289nogrowth41thermophilic
118289nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 118289
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9210cinnomycin
9210fungichromin
9210carbomycin derivatives
20216Cinnamycin
20216Fungichromin

halophily

@refsaltgrowthtested relationconcentration
118289NaClnogrowth0 %
118289NaClnogrowth2 %
118289NaClnogrowth4 %
118289NaClnogrowth6 %
118289NaClnogrowth8 %
118289NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H8), MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11828916947citrate-carbon source
1182894853esculin-hydrolysis
118289606565hippurate+hydrolysis
11828917632nitrate-reduction
11828916301nitrite-reduction
11828917632nitrate-respiration

metabolite production

@refChebi-IDmetaboliteproduction
67770141991cinnamycinyes
6777031639fungichrominyes
11828935581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11828915688acetoin-
11828917234glucose-

enzymes

@refvalueactivityec
118289oxidase-
118289beta-galactosidase-3.2.1.23
118289alcohol dehydrogenase-1.1.1.1
118289gelatinase+/-
118289amylase+
118289DNase+
118289caseinase-3.4.21.50
118289catalase+1.11.1.6
118289tween esterase+
118289gamma-glutamyltransferase+2.3.2.2
118289lecithinase+
118289lipase+
118289lysine decarboxylase-4.1.1.18
118289ornithine decarboxylase-4.1.1.17
118289phenylalanine ammonia-lyase-4.3.1.24
118289protease+
118289tryptophan deaminase-
118289urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    45400C16:015.816
    45400C18:0318
    45400C14:0 ISO2.713.618
    45400C15:0 ANTEISO18.614.711
    45400C15:0 ISO14.114.621
    45400C16:0 10-methyl2.716.433
    45400C16:0 iso10.715.626
    45400C16:1 ω7c7.715.819
    45400C17:0 anteiso5.716.722
    45400C17:0 CYCLO1.916.888
    45400C17:0 iso5.116.629
    45400C18:1 ω9c3.917.769
    45400C18:2 ω6,9c/C18:0 ANTE8.317.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118289-+++-+----++---+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118289+--+-----+---------+-----------+------------------+--+-----++-----------+-----------+----+++-++----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
9210soilJapanJPNAsia
45400SoilJapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_357.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_357&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AY295793
  • Sequence Identity:
  • Total samples: 5402
  • soil counts: 2201
  • aquatic counts: 991
  • animal counts: 1970
  • plant counts: 240

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
92101Risk group (German classification)
1182891Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces cinnamoneus strain CGMCC 4.1084 16S ribosomal RNA gene, partial sequenceHQ2444431389ena53446
20218Streptomyces sp. 40005 16S ribosomal RNA gene, partial sequenceAY2957931475ena232932
20218Streptomyces cinnamoneus strain DSM 40005 16S ribosomal RNA gene, partial cdsGU383220779ena53446
20218Streptomyces cinnamoneus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4152D44018120ena53446
20218Streptomyces cinnamoneus gene for 16S rRNA, partial sequence, strain: NBRC 12852AB1848501475ena53446
20218Streptomyces cinnamoneus strain NBRC 12852 16S ribosomal RNA gene, partial sequenceJN5660341357ena53446
67770Streptoverticillium cinnamoneum spp. cinnamoneum partial 16S rRNAX531711354ena53446

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces cinnamoneus JCM 4633GCA_014650495scaffoldncbi53446
66792Streptomyces cinnamoneus strain JCM 463353446.10wgspatric53446

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.595no
gram-positiveyes89.226no
anaerobicno99.248no
aerobicyes90.155no
halophileno94.727no
spore-formingyes93.599no
glucose-utilyes91.278no
thermophileno98.259yes
motileno93.174no
glucose-fermentno88.933no

External links

@ref: 9210

culture collection no.: DSM 40005, ATCC 11874, ATCC 23897, CBS 293.64, CBS 683.68, CCUG 11122, DSM 41431, ETH 13 355, IFO 12852, IMRU 3664, IPV 1776, IPV 2013, IPV 936, ISP 5005, JCM 4152, JCM 4633, KCC S-0152, KCC S-0633, LMG 5971, NBRC 12852, NCIB 8851, NRRL B-1285, RIA 1102, RIA 360, CIP 108152, BCRC 12169, CECT 3258, CGMCC 4.1084, HAMBI 1067, IMET 41381, NCB 93, NCIMB 8851, VKM Ac-876, CCRC 12169, AS 4.1084, AS 4.1706

straininfo link

  • @ref: 85213
  • straininfo: 13852

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny8089092Isolation and characterization of Streptoverticillium anticoagulant (SAC), a novel protein inhibitor of blood coagulation produced by Streptoverticillium cinnamoneum subsp. cinnamoneum.Tanabe M, Asano T, Moriya N, Sugino H, Kakinuma AJ Biochem10.1093/oxfordjournals.jbchem.a1244051994Amino Acid Sequence, Amino Acids/analysis, Ammonium Sulfate, Bacterial Proteins/biosynthesis/*isolation & purification, Blood Coagulation Factors/*antagonists & inhibitors, Chemical Precipitation, Chromatography, Gel, Chromatography, Liquid, Culture Media, Humans, Molecular Sequence Data, Molecular Weight, Streptomycetaceae/chemistryCultivation
Genetics8089093Primary structure and reactive site of Streptoverticillium anticoagulant (SAC), a novel protein inhibitor of blood coagulation produced by Streptoverticillium cinnamoneum subsp. cinnamoneum.Tanabe M, Kawahara K, Asano T, Kato K, Kakinuma AJ Biochem10.1093/oxfordjournals.jbchem.a1244061994Amino Acid Sequence, Bacterial Proteins/biosynthesis/*chemistry, Binding Sites, Blood Coagulation Factors/*antagonists & inhibitors, Chymotrypsin, Cyanogen Bromide, Cystine/analysis, Molecular Sequence Data, Peptide Fragments/chemistry, Peptide Mapping, Sequence Homology, Amino Acid, Streptomycetaceae/chemistry, Structure-Activity Relationship, Trypsin
Enzymology9672751Purification, characterisation, and gene cloning of transglutaminase from Streptoverticillium cinnamoneum CBS 683.68.Duran R, Junqua M, Schmitter JM, Gancet C, Goulas PBiochimie10.1016/s0300-9084(98)80073-41998Amino Acid Sequence, Base Sequence, Chromatography, Affinity, Chromatography, Gel, Chromatography, Ion Exchange, Cloning, Molecular, *Genes, Fungal, Kinetics, Molecular Sequence Data, Peptide Fragments/chemistry, Polymerase Chain Reaction, Recombinant Proteins/biosynthesis/isolation & purification/metabolism, Streptomycetaceae/*enzymology/*genetics, Substrate Specificity, Transglutaminases/*genetics/isolation & purification/*metabolismGenetics
Enzymology12642677Cloning and engineering of the cinnamycin biosynthetic gene cluster from Streptomyces cinnamoneus cinnamoneus DSM 40005.Widdick DA, Dodd HM, Barraille P, White J, Stein TH, Chater KF, Gasson MJ, Bibb MJProc Natl Acad Sci U S A10.1073/pnas.02305161002003Anti-Bacterial Agents/*biosynthesis, Bacteriocins, Base Sequence, Binding Sites, Cloning, Molecular, Molecular Sequence Data, *Multigene Family, *Peptides, Cyclic, Plasmids, Restriction Mapping, Species Specificity, Streptomyces/*geneticsGenetics
Metabolism21770392Nine post-translational modifications during the biosynthesis of cinnamycin.Okesli A, Cooper LE, Fogle EJ, van der Donk WAJ Am Chem Soc10.1021/ja205783f2011Amino Acid Sequence, Bacteriocins/*metabolism, Gene Expression, Lysinoalanine/metabolism, Molecular Sequence Data, Peptides, Cyclic/*metabolism, Protein Processing, Post-Translational, Streptomyces/*enzymology/genetics/*metabolismGenetics
Metabolism29150515Loop of Streptomyces Feruloyl Esterase Plays an Important Role in the Enzyme's Catalyzing the Release of Ferulic Acid from Biomass.Uraji M, Tamura H, Mizohata E, Arima J, Wan K, Ogawa K, Inoue T, Hatanaka TAppl Environ Microbiol10.1128/AEM.02300-172018*Biomass, Carboxylic Ester Hydrolases/*chemistry/genetics/*metabolism, Catalysis, Coumaric Acids/*metabolism, Crystallization, Esterases/genetics, Fungal Proteins/genetics, Protein Domains, Recombinant Proteins/chemistry/genetics/metabolism, Streptomyces/*enzymology/genetics/metabolism, Substrate SpecificityEnzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9210Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40005)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40005
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36995Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5743
45400Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 11122)https://www.ccug.se/strain?id=11122
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85213Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13852.1StrainInfo: A central database for resolving microbial strain identifiers
118289Curators of the CIPCollection of Institut Pasteur (CIP 108152)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108152