Strain identifier

BacDive ID: 161437

Type strain: No

Species: Shewanella algae

Strain history: K. Komagata <-- R. Hugh 2630 <-- Kunz.

NCBI tax ID(s): 38313 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
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General

@ref: 67770

BacDive-ID: 161437

keywords: 16S sequence, Bacteria, mesophilic

description: Shewanella algae JCM 13988 is a mesophilic bacterium that was isolated from Clinical, perineal wound.

NCBI tax id

  • NCBI tax id: 38313
  • Matching level: species

strain history

  • @ref: 67770
  • history: K. Komagata <-- R. Hugh 2630 <-- Kunz.

doi: 10.13145/bacdive161437.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella algae
  • full scientific name: Shewanella algae corrig. Simidu et al. 1990
  • synonyms

    @refsynonym
    20215Shewanella haliotis
    20215Shewanella alga
    20215Shewanella upenei

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella algae

full scientific name: Shewanella algae Simidu et al. 1990

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Clinical, perineal wound

taxonmaps

  • @ref: 69479
  • File name: preview.99_1099.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_641;97_744;98_863;99_1099&stattab=map
  • Last taxonomy: Shewanella algae
  • 16S sequence: LC508014
  • Sequence Identity:
  • Total samples: 4840
  • soil counts: 118
  • aquatic counts: 730
  • animal counts: 3902
  • plant counts: 90

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Shewanella algae gene for 16S rRNA, partial sequence, strain: Hugh2630AB247216526ena38313
67770Shewanella algae JCM 13988 gene for 16S rRNA, partial sequenceLC5080141467ena38313

External links

@ref: 67770

culture collection no.: JCM 13988

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/