Strain identifier

BacDive ID: 161423

Type strain: No

Species: Pseudomonas alcaliphila

Strain history: K. Komagata <-- R. Hugh 648 <-- Sarkar.

NCBI tax ID(s): 101564 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 161423

keywords: 16S sequence, Bacteria, mesophilic

description: Pseudomonas alcaliphila JCM 13959 is a mesophilic bacterium that was isolated from Clinical specimen .

NCBI tax id

  • NCBI tax id: 101564
  • Matching level: species

strain history

  • @ref: 67770
  • history: K. Komagata <-- R. Hugh 648 <-- Sarkar.

doi: 10.13145/bacdive161423.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas alcaliphila
  • full scientific name: Pseudomonas alcaliphila Yumoto et al. 2001

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas alcaliphila

full scientific name: Pseudomonas alcaliphila Yumoto et al. 2001

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Clinical specimen (blood from a patient with pyrexia)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2828.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_1532;99_2828&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: LC507987
  • Sequence Identity:
  • Total samples: 7465
  • soil counts: 769
  • aquatic counts: 2670
  • animal counts: 2451
  • plant counts: 1575

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Pseudomonas sp. Hugh648 gene for 16S rRNA, partial sequence, strain: Hugh648AB247192518ena366844
67770Pseudomonas alcaliphila JCM 13959 gene for 16S rRNA, partial sequenceLC5079871459ena101564

External links

@ref: 67770

culture collection no.: JCM 13959

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/