Strain identifier
BacDive ID: 161423
Type strain:
Species: Pseudomonas alcaliphila
Strain history: K. Komagata <-- R. Hugh 648 <-- Sarkar.
NCBI tax ID(s): 101564 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161423
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudomonas alcaliphila JCM 13959 is a mesophilic bacterium that was isolated from Clinical specimen .
NCBI tax id
- NCBI tax id: 101564
- Matching level: species
strain history
- @ref: 67770
- history: K. Komagata <-- R. Hugh 648 <-- Sarkar.
doi: 10.13145/bacdive161423.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas alcaliphila
- full scientific name: Pseudomonas alcaliphila Yumoto et al. 2001
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas alcaliphila
full scientific name: Pseudomonas alcaliphila Yumoto et al. 2001
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Clinical specimen (blood from a patient with pyrexia)
taxonmaps
- @ref: 69479
- File name: preview.99_2828.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_1532;99_2828&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: LC507987
- Sequence Identity:
- Total samples: 7465
- soil counts: 769
- aquatic counts: 2670
- animal counts: 2451
- plant counts: 1575
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
67770 | Pseudomonas sp. Hugh648 gene for 16S rRNA, partial sequence, strain: Hugh648 | AB247192 | 518 | ena | 366844 |
67770 | Pseudomonas alcaliphila JCM 13959 gene for 16S rRNA, partial sequence | LC507987 | 1459 | ena | 101564 |
External links
@ref: 67770
culture collection no.: JCM 13959
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |