Strain identifier
BacDive ID: 16136
Type strain:
Species: Streptomyces abikoensis
Strain history: KCC S-0176 <-- IFM 1018 (T. Arai 100).
NCBI tax ID(s): 68246 (species)
General
@ref: 9316
BacDive-ID: 16136
DSM-Number: 40105
keywords: 16S sequence, Bacteria, mesophilic, antibiotic compound production
description: Streptomyces abikoensis DSM 40105 is a mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.
NCBI tax id
- NCBI tax id: 68246
- Matching level: species
strain history
@ref | history |
---|---|
9316 | <- E.B. Shirling, ISP <- T. Arai, IFM |
67770 | KCC S-0176 <-- IFM 1018 (T. Arai 100). |
doi: 10.13145/bacdive16136.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces abikoensis
- full scientific name: Streptomyces abikoensis (Umezawa et al. 1951) Witt and Stackebrandt 1991
synonyms
@ref synonym 20215 Streptoverticillium luteoverticillatum 20215 Streptomyces olivoreticuli 20215 Streptoverticillium olivoreticulum subsp. cellulophilum 20215 Streptomyces abikoensum 20215 Streptomyces abikoensis 20215 Streptomyces luteoverticillatus 20215 Streptomyces parvisporogenes 20215 Streptoverticillium abikoense 20215 Streptoverticillium olivoreticuli 20215 Streptoverticillium parvisporogenum 20215 Streptoverticillium olivoreticuli subsp. cellulophilum 20215 Streptoverticillium ehimense 20215 Streptoverticillium parvisporogenes 20215 Streptoverticillium olivoreticulum 20215 Streptomyces ehimensis 20215 Streptomyces ekimensis
@ref: 9316
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces abikoensis
full scientific name: Streptomyces abikoensis (Umezawa et al. 1951) Witt and Stackebrandt 1991
type strain: no
Morphology
colony morphology
@ref | colony color | medium used |
---|---|---|
69241 | Fawn brown (8007), Nut brown (8011) | ISP 5 |
69241 | Clay brown (8003) | ISP 2 |
69241 | Beige (1001) | ISP 6 |
69241 | Beige (1001) | ISP 7 |
69241 | Grey brown (8019) | suter with tyrosine |
69241 | Grey brown (8019) | suter without tyrosine |
69241 | Nut brown (8011) | ISP 3 |
69241 | Pale brown (8025), Terra brown (8028) | ISP 4 |
multicellular morphology
@ref | forms multicellular complex | complex name | complex color | medium name |
---|---|---|---|---|
69241 | yes | Aerial mycelium | Platinum grey (7036), cream (9001) | ISP 2 |
69241 | yes | Aerial mycelium | Cream (9001) | ISP 3 |
69241 | yes | Aerial mycelium | Signal grey (7004) | ISP 4 |
69241 | yes | Aerial mycelium | Telegrey 4 (7047) | ISP 5 |
69241 | no | Aerial mycelium | ISP 6 | |
69241 | yes | Aerial mycelium | Cream (9001) | ISP 7 |
69241 | no | Aerial mycelium | suter with tyrosine | |
69241 | yes | Aerial mycelium | Moss grey (7003), cream (9001) | suter without tyrosine |
pigmentation
@ref | production | name | color |
---|---|---|---|
69241 | no | Melanin | |
69241 | yes | soluble pigment | Ochre brown (8001), sand yellow (1002), chocolate brown (8017), brown beige (1011), ivory (1014), jet black (9005), clay brown (8003) |
multimedia
@ref | multimedia content | caption | intellectual property rights |
---|---|---|---|
69241 | DSM_40105_image3.jpeg | Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7) | Helmholtz-Zentrum für Infektionsforschung GmbH |
69241 | DSM_40105_image4.jpeg | Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7) | Helmholtz-Zentrum für Infektionsforschung GmbH |
Culture and growth conditions
culture medium
- @ref: 9316
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9316 | positive | growth | 28 | mesophilic |
18534 | positive | optimum | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
tolerance
- @ref: 18534
- compound: Lysozyme
- percentage: 0.5
compound production
@ref | compound |
---|---|
9316 | heptaene |
9316 | viomycin complex |
20216 | Heptaenic antibiotic |
20216 | Olivomycine |
20216 | Viomycin |
67770 | Viomycin-like antibiotic |
halophily
- @ref: 69241
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-5 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
69241 | 22599 | arabinose | - | growth |
69241 | 62968 | cellulose | - | growth |
69241 | 28757 | fructose | - | growth |
69241 | 17234 | glucose | + | growth |
69241 | 17268 | inositol | + | growth |
69241 | 37684 | mannose | - | growth |
69241 | 16634 | raffinose | - | growth |
69241 | 26546 | rhamnose | - | growth |
69241 | 17992 | sucrose | - | growth |
69241 | 18222 | xylose | - | growth |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | + | hydrolysis |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | + | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | yes |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | gelatinase | - | |
68379 | urease | + | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | - | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | + | |
68382 | valine arylamidase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | alpha-mannosidase | + | 3.2.1.24 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69241 | - | - | - | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69241 | + | +/- | + | + | +/- | + | +/- | +/- | +/- | + | + | +/- | +/- | +/- | + | +/- | +/- | + | +/- |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
18534 | - | + | + | - | - | + | - | - | - | - | - |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
9316 | 1 | Risk group (German classification) |
18534 | 1 | German classification |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces olivoreticuli gene for 16S rRNA, partial sequence, strain: NBRC 12896 | AB184853 | 1473 | ena | 68246 |
20218 | Streptomyces olivoreticuli subsp. olivoreticuli strain DSM 40105 16S ribosomal RNA gene, partial sequence | AY999857 | 1425 | ena | 284034 |
20218 | Streptomyces olivoreticuli gene for 16S ribosomal RNA, partial sequence, strain: JCM 4176 | D44023 | 120 | ena | 68246 |
67770 | Streptomyces olivoreticuli subsp. olivoreticuli 16S rRNA gene, type strain LMG 20050 | AJ781345 | 1476 | ena | 284034 |
External links
@ref: 9316
culture collection no.: DSM 40105, ATCC 23943, CBS 927.68, IFM 1018, IFO 12896, ISP 5105, JCM 4176, JCM 4657, NBRC 12896, RIA 1122, BCRC 13765, IMET 43690, KCTC 19043, NRRL B-2091, VKM Ac-839
straininfo link
- @ref: 85201
- straininfo: 377529
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9316 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40105) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40105 | |||
18534 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM40105.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20216 | Curators of the HKI | http://www.leibniz-hki.de/de/ | Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69241 | Wink, J. | https://cdn.dsmz.de/wink/DSM%2040105.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
85201 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID377529.1 | StrainInfo: A central database for resolving microbial strain identifiers |