Strain identifier

BacDive ID: 16136

Type strain: No

Species: Streptomyces abikoensis

Strain history: KCC S-0176 <-- IFM 1018 (T. Arai 100).

NCBI tax ID(s): 68246 (species)

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General

@ref: 9316

BacDive-ID: 16136

DSM-Number: 40105

keywords: 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces abikoensis DSM 40105 is a mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 68246
  • Matching level: species

strain history

@refhistory
9316<- E.B. Shirling, ISP <- T. Arai, IFM
67770KCC S-0176 <-- IFM 1018 (T. Arai 100).

doi: 10.13145/bacdive16136.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces abikoensis
  • full scientific name: Streptomyces abikoensis (Umezawa et al. 1951) Witt and Stackebrandt 1991
  • synonyms

    @refsynonym
    20215Streptoverticillium luteoverticillatum
    20215Streptomyces olivoreticuli
    20215Streptoverticillium olivoreticulum subsp. cellulophilum
    20215Streptomyces abikoensum
    20215Streptomyces abikoensis
    20215Streptomyces luteoverticillatus
    20215Streptomyces parvisporogenes
    20215Streptoverticillium abikoense
    20215Streptoverticillium olivoreticuli
    20215Streptoverticillium parvisporogenum
    20215Streptoverticillium olivoreticuli subsp. cellulophilum
    20215Streptoverticillium ehimense
    20215Streptoverticillium parvisporogenes
    20215Streptoverticillium olivoreticulum
    20215Streptomyces ehimensis
    20215Streptomyces ekimensis

@ref: 9316

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces abikoensis

full scientific name: Streptomyces abikoensis (Umezawa et al. 1951) Witt and Stackebrandt 1991

type strain: no

Morphology

colony morphology

@refcolony colormedium used
69241Fawn brown (8007), Nut brown (8011)ISP 5
69241Clay brown (8003)ISP 2
69241Beige (1001)ISP 6
69241Beige (1001)ISP 7
69241Grey brown (8019)suter with tyrosine
69241Grey brown (8019)suter without tyrosine
69241Nut brown (8011)ISP 3
69241Pale brown (8025), Terra brown (8028)ISP 4

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69241yesAerial myceliumPlatinum grey (7036), cream (9001)ISP 2
69241yesAerial myceliumCream (9001)ISP 3
69241yesAerial myceliumSignal grey (7004)ISP 4
69241yesAerial myceliumTelegrey 4 (7047)ISP 5
69241noAerial myceliumISP 6
69241yesAerial myceliumCream (9001)ISP 7
69241noAerial myceliumsuter with tyrosine
69241yesAerial myceliumMoss grey (7003), cream (9001)suter without tyrosine

pigmentation

@refproductionnamecolor
69241noMelanin
69241yessoluble pigmentOchre brown (8001), sand yellow (1002), chocolate brown (8017), brown beige (1011), ivory (1014), jet black (9005), clay brown (8003)

multimedia

@refmultimedia contentcaptionintellectual property rights
69241DSM_40105_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69241DSM_40105_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 9316
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9316positivegrowth28mesophilic
18534positiveoptimum28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

tolerance

  • @ref: 18534
  • compound: Lysozyme
  • percentage: 0.5

compound production

@refcompound
9316heptaene
9316viomycin complex
20216Heptaenic antibiotic
20216Olivomycine
20216Viomycin
67770Viomycin-like antibiotic

halophily

  • @ref: 69241
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6924122599arabinose-growth
6924162968cellulose-growth
6924128757fructose-growth
6924117234glucose+growth
6924117268inositol+growth
6924137684mannose-growth
6924116634raffinose-growth
6924126546rhamnose-growth
6924117992sucrose-growth
6924118222xylose-growth
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea+hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68379gelatinase-
68379urease+3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase-3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382valine arylamidase+
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-glucosidase+3.2.1.20
68382alpha-mannosidase+3.2.1.24

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69241---+-----+---------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69241++/-+++/-++/-+/-+/-+++/-+/-+/-++/-+/-++/-

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18534-++--+-----

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
93161Risk group (German classification)
185341German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces olivoreticuli gene for 16S rRNA, partial sequence, strain: NBRC 12896AB1848531473ena68246
20218Streptomyces olivoreticuli subsp. olivoreticuli strain DSM 40105 16S ribosomal RNA gene, partial sequenceAY9998571425ena284034
20218Streptomyces olivoreticuli gene for 16S ribosomal RNA, partial sequence, strain: JCM 4176D44023120ena68246
67770Streptomyces olivoreticuli subsp. olivoreticuli 16S rRNA gene, type strain LMG 20050AJ7813451476ena284034

External links

@ref: 9316

culture collection no.: DSM 40105, ATCC 23943, CBS 927.68, IFM 1018, IFO 12896, ISP 5105, JCM 4176, JCM 4657, NBRC 12896, RIA 1122, BCRC 13765, IMET 43690, KCTC 19043, NRRL B-2091, VKM Ac-839

straininfo link

  • @ref: 85201
  • straininfo: 377529

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9316Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40105)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40105
18534Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40105.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69241Wink, J.https://cdn.dsmz.de/wink/DSM%2040105.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
85201Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID377529.1StrainInfo: A central database for resolving microbial strain identifiers