Strain identifier
BacDive ID: 161350
Type strain: 
Species: Mediterraneibacter glycyrrhizinilyticus
Strain history: K. Sakuma ZM38.
NCBI tax ID(s): 1291051 (strain), 342942 (species)
General
@ref: 67770
BacDive-ID: 161350
keywords: genome sequence, Bacteria, anaerobe, mesophilic, Gram-positive
description: Mediterraneibacter glycyrrhizinilyticus JCM 13369 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Human feces.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1291051 | strain |
| 342942 | species |
strain history
- @ref: 67770
- history: K. Sakuma ZM38.
doi: 10.13145/bacdive161350.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Mediterraneibacter
- species: Mediterraneibacter glycyrrhizinilyticus
- full scientific name: Mediterraneibacter glycyrrhizinilyticus (Sakuma et al. 2006) Togo et al. 2019
synonyms
- @ref: 20215
- synonym: Clostridium glycyrrhizinilyticum
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Mediterraneibacter
species: Mediterraneibacter glycyrrhizinilyticus
full scientific name: Mediterraneibacter glycyrrhizinilyticus (Sakuma et al. 2006) Togo et al. 2019
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.999
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.666 |
| 69481 | yes | 98 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human feces
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | [Clostridium] glycyrrhizinilyticum JCM 13369 | 1291051.3 | wgs | patric | 1291051 |
| 66792 | Lachnoclostridium glycyrrhizinilyticum JCM 13369 | 2728369668 | draft | img | 1291051 |
| 67770 | Mediterraneibacter glycyrrhizinilyticus JCM 13369 | GCA_001311035 | contig | ncbi | 1291051 |
GC content
- @ref: 67770
- GC-content: 46.2
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 98 | no |
| motile | no | 52.776 | no |
| gram-positive | yes | 94.709 | no |
| anaerobic | yes | 99.662 | no |
| aerobic | no | 98.821 | no |
| halophile | no | 85.625 | no |
| spore-forming | no | 52.751 | no |
| glucose-util | yes | 92.317 | no |
| flagellated | no | 86.758 | no |
| thermophile | no | 93.977 | yes |
| glucose-ferment | yes | 80.513 | no |
External links
@ref: 67770
culture collection no.: JCM 13369
straininfo link
- @ref: 113366
- straininfo: 301459
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 113366 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID301459.1 |