Strain identifier
BacDive ID: 161309
Type strain:
Species: Pseudomonas jessenii subsp. pseudoputida
Strain history: K. Komagata <-- R. Hugh 822 <-- ATCC 11250 <-- O. Hayaishi Tr. 23 <-- S. H. Hutner.
NCBI tax ID(s): 303 (species)
General
@ref: 67770
BacDive-ID: 161309
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudomonas jessenii subsp. pseudoputida JCM 13062 is a mesophilic bacterium of the family Pseudomonadaceae.
NCBI tax id
- NCBI tax id: 303
- Matching level: species
strain history
- @ref: 67770
- history: K. Komagata <-- R. Hugh 822 <-- ATCC 11250 <-- O. Hayaishi Tr. 23 <-- S. H. Hutner.
doi: 10.13145/bacdive161309.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas jessenii subsp. pseudoputida
- full scientific name: Pseudomonas jessenii subsp. pseudoputida Kosina et al. 2013
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas putida
full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_185.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_98;99_185&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: LC507959
- Sequence Identity:
- Total samples: 2464
- soil counts: 833
- aquatic counts: 448
- animal counts: 521
- plant counts: 662
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
67770 | Pseudomonas putida 16S ribosomal RNA gene, partial sequence | AF095892 | 1466 | ena | 1968891 |
67770 | Pseudomonas putida JCM 13062 gene for 16S rRNA, partial sequence | LC507959 | 1459 | ena | 303 |
External links
@ref: 67770
culture collection no.: JCM 13062, ATCC 11250, CCM 3656, KCTC 1645, NCIMB 10098
straininfo link
- @ref: 113356
- straininfo: 35338
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Pathogenicity | 16616957 | Reduction of 2,4-dichlorophenol toxicity to Pseudomonas putida after oxidative incubation with humic substances and a biomimetic catalyst. | Hahn D, Cozzolino A, Piccolo A, Armenante PM | Ecotoxicol Environ Saf | 10.1016/j.ecoenv.2006.02.004 | 2006 | Biomimetics, Catalysis, Chlorophenols/chemistry/*toxicity, Environmental Restoration and Remediation, Ferric Compounds/*chemistry, *Humic Substances, Hydrogen Peroxide/chemistry, Metalloporphyrins/*chemistry, Oxidation-Reduction, Pseudomonas putida/*drug effects/growth & development | |
Phylogeny | 23636777 | Description of Pseudomonas jessenii subsp. pseudoputida subsp. nov., amended description of Pseudomonas jessenii and description of Pseudomonas jessenii subsp. jessenii subsp. nov. | Kosina M, Maslanova I, Pascutti-Vavrova A, Sedo O, Lexa M, Svec P, Sedlacek I | Folia Microbiol (Praha) | 10.1007/s12223-013-0236-8 | 2013 | Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Proteome/analysis, Pseudomonas/chemistry/*classification/genetics, Ribotyping, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization | Genetics |
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
113356 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID35338.1 |