Strain identifier

BacDive ID: 161309

Type strain: No

Species: Pseudomonas jessenii subsp. pseudoputida

Strain history: K. Komagata <-- R. Hugh 822 <-- ATCC 11250 <-- O. Hayaishi Tr. 23 <-- S. H. Hutner.

NCBI tax ID(s): 303 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 161309

keywords: 16S sequence, Bacteria, mesophilic

description: Pseudomonas jessenii subsp. pseudoputida JCM 13062 is a mesophilic bacterium of the family Pseudomonadaceae.

NCBI tax id

  • NCBI tax id: 303
  • Matching level: species

strain history

  • @ref: 67770
  • history: K. Komagata <-- R. Hugh 822 <-- ATCC 11250 <-- O. Hayaishi Tr. 23 <-- S. H. Hutner.

doi: 10.13145/bacdive161309.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas jessenii subsp. pseudoputida
  • full scientific name: Pseudomonas jessenii subsp. pseudoputida Kosina et al. 2013

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas putida

full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_185.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_98;99_185&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: LC507959
  • Sequence Identity:
  • Total samples: 2464
  • soil counts: 833
  • aquatic counts: 448
  • animal counts: 521
  • plant counts: 662

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Pseudomonas putida 16S ribosomal RNA gene, partial sequenceAF0958921466ena1968891
67770Pseudomonas putida JCM 13062 gene for 16S rRNA, partial sequenceLC5079591459ena303

External links

@ref: 67770

culture collection no.: JCM 13062, ATCC 11250, CCM 3656, KCTC 1645, NCIMB 10098

straininfo link

  • @ref: 113356
  • straininfo: 35338

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity16616957Reduction of 2,4-dichlorophenol toxicity to Pseudomonas putida after oxidative incubation with humic substances and a biomimetic catalyst.Hahn D, Cozzolino A, Piccolo A, Armenante PMEcotoxicol Environ Saf10.1016/j.ecoenv.2006.02.0042006Biomimetics, Catalysis, Chlorophenols/chemistry/*toxicity, Environmental Restoration and Remediation, Ferric Compounds/*chemistry, *Humic Substances, Hydrogen Peroxide/chemistry, Metalloporphyrins/*chemistry, Oxidation-Reduction, Pseudomonas putida/*drug effects/growth & development
Phylogeny23636777Description of Pseudomonas jessenii subsp. pseudoputida subsp. nov., amended description of Pseudomonas jessenii and description of Pseudomonas jessenii subsp. jessenii subsp. nov.Kosina M, Maslanova I, Pascutti-Vavrova A, Sedo O, Lexa M, Svec P, Sedlacek IFolia Microbiol (Praha)10.1007/s12223-013-0236-82013Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Proteome/analysis, Pseudomonas/chemistry/*classification/genetics, Ribotyping, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationGenetics

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113356Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID35338.1