Strain identifier
BacDive ID: 161294
Type strain: 
Species: Phocaeicola plebeius
Strain history: M. Kitahara M132.
NCBI tax ID(s): 310297 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 161294
keywords: 16S sequence, Bacteria, mesophilic
description: Phocaeicola plebeius JCM 12978 is a mesophilic bacterium that was isolated from Human feces.
NCBI tax id
- NCBI tax id: 310297
- Matching level: species
strain history
- @ref: 67770
- history: M. Kitahara M132.
doi: 10.13145/bacdive161294.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Bacteroidaceae
- genus: Phocaeicola
- species: Phocaeicola plebeius
- full scientific name: Phocaeicola plebeius (Kitahara et al. 2005) García-López et al. 2020
synonyms
- @ref: 20215
- synonym: Bacteroides plebeius
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Bacteroidaceae
genus: Phocaeicola
species: Phocaeicola plebeius
full scientific name: Phocaeicola plebeius (Kitahara et al. 2005) Garc¡a-L¢pez et al. 2020
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human feces
taxonmaps
- @ref: 69479
- File name: preview.99_12193.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_258;96_4788;97_5805;98_7283;99_12193&stattab=map
- Last taxonomy: Phocaeicola plebeius subclade
- 16S sequence: AB200222
- Sequence Identity:
- Total samples: 37805
- soil counts: 244
- aquatic counts: 1112
- animal counts: 36355
- plant counts: 94
Sequence information
16S sequences
- @ref: 67770
- description: Bacteroides plebeius gene for 16S rRNA, partial sequence, strain: M132
- accession: AB200222
- length: 1493
- database: nuccore
- NCBI tax ID: 310297
External links
@ref: 67770
culture collection no.: JCM 12978
straininfo link
- @ref: 113341
- straininfo: 231852
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113341 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID231852.1 |