Strain identifier

BacDive ID: 161280

Type strain: Yes

Species: Natrinema altunense

Strain history: CGMCC 1.3731 <-- X.-W. Xu AJ2.

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 161280

keywords: genome sequence, 16S sequence, Archaea, mesophilic

description: Natrinema altunense JCM 12890 is a mesophilic archaeon that was isolated from Ayakekum salt lake in Altun Mountain.

NCBI tax id

NCBI tax idMatching level
222984species
1227494strain

strain history

  • @ref: 67770
  • history: CGMCC 1.3731 <-- X.-W. Xu AJ2.

doi: 10.13145/bacdive161280.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Natrialbales
  • family: Natrialbaceae
  • genus: Natrinema
  • species: Natrinema altunense
  • full scientific name: Natrinema altunense Xu et al. 2005

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Natrialbales

family: Natrialbaceae

genus: Natrinema

species: Natrinema altunense

full scientific name: Natrinema altunense Xu et al. 2005

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Ayakekum salt lake in Altun Mountain
  • geographic location: Xinjiang
  • country: China
  • origin.country: CHN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_187307.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17652;96_68845;97_89574;98_121865;99_187307&stattab=map
  • Last taxonomy: Natrinema
  • 16S sequence: AY208972
  • Sequence Identity:
  • Total samples: 39
  • soil counts: 4
  • aquatic counts: 34
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 67770
  • description: Natrinema altunense strain AJ2 16S ribosomal RNA gene, partial sequence
  • accession: AY208972
  • length: 1474
  • database: ena
  • NCBI tax ID: 222984

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Natrinema altunense JCM 12890GCA_000337155contigncbi1227494
66792Natrinema altunense JCM 128902554235488draftimg1227494
67770Natrinema altunense AJ2GCA_000731985contigncbi222984
66792Natrinema altunense JCM 128901227494.3wgspatric1227494

GC content

  • @ref: 67770
  • GC-content: 65.6
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 67770

culture collection no.: JCM 12890, CGMCC 1.3731

straininfo link

  • @ref: 113333
  • straininfo: 139004

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15879273Natrinema altunense sp. nov., an extremely halophilic archaeon isolated from a salt lake in Altun Mountain in Xinjiang, China.Xu XW, Ren PG, Liu SJ, Wu M, Zhou PJInt J Syst Evol Microbiol10.1099/ijs.0.63622-02005China, DNA, Archaeal/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Genes, Archaeal, Genes, rRNA, Growth Inhibitors/pharmacology, Halobacteriaceae/*classification/cytology/*isolation & purification/physiology, Hydrogen-Ion Concentration, Magnesium Chloride/pharmacology, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phospholipids/analysis/isolation & purification, Phylogeny, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/pharmacology, *Water MicrobiologyEnzymology
Phylogeny17082411Natrinema ejinorense sp. nov., isolated from a saline lake in Inner Mongolia, China.Castillo AM, Gutierrez MC, Kamekura M, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.64421-02006Base Composition, Carbohydrate Metabolism, China, DNA, Archaeal/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Gelatin/metabolism, Genes, rRNA, Halobacteriaceae/*classification/cytology/*isolation & purification/physiology, Hydrogen Sulfide/metabolism, Hydrogen-Ion Concentration, Lipids/analysis, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Saline Solution, Hypertonic, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Starch/metabolism, Temperature, *Water MicrobiologyMetabolism
Genetics28265340High quality draft genome sequence of an extremely halophilic archaeon Natrinema altunense strain AJ2(T).Cheng H, Huo YY, Hu J, Xu XW, Wu MStand Genomic Sci10.1186/s40793-017-0237-32017

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113333Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID139004.1