Strain identifier
BacDive ID: 161280
Type strain:
Species: Natrinema altunense
Strain history: CGMCC 1.3731 <-- X.-W. Xu AJ2.
NCBI tax ID(s): 1227494 (strain), 222984 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161280
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Natrinema altunense JCM 12890 is a mesophilic archaeon that was isolated from Ayakekum salt lake in Altun Mountain.
NCBI tax id
NCBI tax id | Matching level |
---|---|
222984 | species |
1227494 | strain |
strain history
- @ref: 67770
- history: CGMCC 1.3731 <-- X.-W. Xu AJ2.
doi: 10.13145/bacdive161280.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Natrialbales
- family: Natrialbaceae
- genus: Natrinema
- species: Natrinema altunense
- full scientific name: Natrinema altunense Xu et al. 2005
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Natrialbales
family: Natrialbaceae
genus: Natrinema
species: Natrinema altunense
full scientific name: Natrinema altunense Xu et al. 2005
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Ayakekum salt lake in Altun Mountain
- geographic location: Xinjiang
- country: China
- origin.country: CHN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_187307.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17652;96_68845;97_89574;98_121865;99_187307&stattab=map
- Last taxonomy: Natrinema
- 16S sequence: AY208972
- Sequence Identity:
- Total samples: 39
- soil counts: 4
- aquatic counts: 34
- plant counts: 1
Sequence information
16S sequences
- @ref: 67770
- description: Natrinema altunense strain AJ2 16S ribosomal RNA gene, partial sequence
- accession: AY208972
- length: 1474
- database: ena
- NCBI tax ID: 222984
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Natrinema altunense JCM 12890 | GCA_000337155 | contig | ncbi | 1227494 |
66792 | Natrinema altunense JCM 12890 | 2554235488 | draft | img | 1227494 |
67770 | Natrinema altunense AJ2 | GCA_000731985 | contig | ncbi | 222984 |
66792 | Natrinema altunense JCM 12890 | 1227494.3 | wgs | patric | 1227494 |
GC content
- @ref: 67770
- GC-content: 65.6
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 67770
culture collection no.: JCM 12890, CGMCC 1.3731
straininfo link
- @ref: 113333
- straininfo: 139004
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 15879273 | Natrinema altunense sp. nov., an extremely halophilic archaeon isolated from a salt lake in Altun Mountain in Xinjiang, China. | Xu XW, Ren PG, Liu SJ, Wu M, Zhou PJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.63622-0 | 2005 | China, DNA, Archaeal/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Genes, Archaeal, Genes, rRNA, Growth Inhibitors/pharmacology, Halobacteriaceae/*classification/cytology/*isolation & purification/physiology, Hydrogen-Ion Concentration, Magnesium Chloride/pharmacology, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phospholipids/analysis/isolation & purification, Phylogeny, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/pharmacology, *Water Microbiology | Enzymology |
Phylogeny | 17082411 | Natrinema ejinorense sp. nov., isolated from a saline lake in Inner Mongolia, China. | Castillo AM, Gutierrez MC, Kamekura M, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa A | Int J Syst Evol Microbiol | 10.1099/ijs.0.64421-0 | 2006 | Base Composition, Carbohydrate Metabolism, China, DNA, Archaeal/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Gelatin/metabolism, Genes, rRNA, Halobacteriaceae/*classification/cytology/*isolation & purification/physiology, Hydrogen Sulfide/metabolism, Hydrogen-Ion Concentration, Lipids/analysis, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Saline Solution, Hypertonic, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Starch/metabolism, Temperature, *Water Microbiology | Metabolism |
Genetics | 28265340 | High quality draft genome sequence of an extremely halophilic archaeon Natrinema altunense strain AJ2(T). | Cheng H, Huo YY, Hu J, Xu XW, Wu M | Stand Genomic Sci | 10.1186/s40793-017-0237-3 | 2017 |
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
113333 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID139004.1 |