Strain identifier

BacDive ID: 16127

Type strain: Yes

Species: Streptomyces werraensis

Strain Designation: FH 1282, FH 3582

Strain history: KCC S-0860 <-- IFO 13404 <-- SAJ <-- ISP 5486 <-- ATCC 14424 <-- Farbwerke Hoechst AG strain FH 3582.

NCBI tax ID(s): 68284 (species)

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General

@ref: 9764

BacDive-ID: 16127

DSM-Number: 40745

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces werraensis FH 1282 is a spore-forming, mesophilic bacterium that produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 68284
  • Matching level: species

strain history

@refhistory
9764<- Farbwerke Hoechst; FH 1282
67770KCC S-0860 <-- IFO 13404 <-- SAJ <-- ISP 5486 <-- ATCC 14424 <-- Farbwerke Hoechst AG strain FH 3582.

doi: 10.13145/bacdive16127.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces werraensis
  • full scientific name: Streptomyces werraensis Wallhäusser et al. 1964 (Approved Lists 1980)

@ref: 9764

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces werraensis

full scientific name: Streptomyces werraensis Wallhäusser et al. 1964

strain designation: FH 1282, FH 3582

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.21
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9764GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9764ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
9764STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9764positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9764nonactin
9764werramycine
67770Werramycin

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
677707614nonactinyes
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
19463+----------

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_6264.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_1662;99_6264&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB184381
  • Sequence Identity:
  • Total samples: 166
  • soil counts: 112
  • aquatic counts: 2
  • animal counts: 49
  • plant counts: 3

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
97641Risk group (German classification)
194631Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces werraensis gene for 16S rRNA, partial sequenceAB122711565ena68284
20218Streptomyces werraensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4860D44411121ena68284
20218Streptomyces werraensis gene for 16S rRNA, partial sequence, strain: NBRC 13404AB1843811474ena68284
20218Streptomyces werraensis strain NRRL B-5317T 16S ribosomal RNA gene, partial sequenceDQ4425581478ena68284
20218Streptomyces werraensis 16S ribosomal RNA gene, partial sequenceKC355416876ena68284

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces werraensis JCM 4860GCA_014656175scaffoldncbi68284
66792Streptomyces werraensis strain JCM 486068284.3wgspatric68284

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.799no
gram-positiveyes91.137no
anaerobicno99.337no
aerobicyes94.005no
halophileno92.242no
spore-formingyes96.086no
glucose-utilyes88.576no
thermophileno97.909no
motileno94.144no
glucose-fermentno90.043no

External links

@ref: 9764

culture collection no.: DSM 40745, ATCC 14424, CBS 437.67, CBS 705.72, DSM 40486, IFO 13404, ISP 5486, JCM 4860, RIA 1365, NBRC 13404, BCRC 12038, KCTC 19066, NRRL B-5317

straininfo link

  • @ref: 85192
  • straininfo: 389316

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9764Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40745)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40745
19463Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40486.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85192Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389316.1StrainInfo: A central database for resolving microbial strain identifiers