Strain identifier

BacDive ID: 16126

Type strain: Yes

Species: Streptomyces viridosporus

Strain Designation: 04889

Strain history: CIP <- 2004, CCUG <- 1997, DSMZ <- E.B. Shirling <- NRRL <- Parke Davis: strain 04889

NCBI tax ID(s): 67581 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 9402

BacDive-ID: 16126

DSM-Number: 40243

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces viridosporus 04889 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 67581
  • Matching level: species

strain history

@refhistory
9402<- E.B. Shirling, ISP <- NRRL <- Parke Davis & Co., 04889
67770KCC S-0859 <-- IFO 13353 <-- SAJ <-- ISP 5243 <-- NRRL 2414 <-- Parke, Davis & Co.; PD 04889.
123869CIP <- 2004, CCUG <- 1997, DSMZ <- E.B. Shirling <- NRRL <- Parke Davis: strain 04889

doi: 10.13145/bacdive16126.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces viridosporus
  • full scientific name: Streptomyces viridosporus Pridham et al. 1958 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Streptomyces ghanaensis

@ref: 9402

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces viridosporus

full scientific name: Streptomyces viridosporus Pridham et al. 1958 emend. Goodfellow et al. 2017

strain designation: 04889

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93.364
69480100positive
123869nopositivefilament-shaped

colony morphology

@refcolony colormedium usedincubation periodhemolysis ability
69253Brown beige (1011), chrome green (6020)ISP 7
537062-3 days
69253Ivory (1014)ISP 2
69253Ivory (1014)ISP 6
69253Olive grey (7002)ISP 5
69253Oyster white (1013)ISP 4
69253Sand yellow (1002), moss grey (7003)ISP 3
69253Sand yellow (1002), moss grey (7003)suter with tyrosine
69253Sand yellow (1002), moss grey (7003)suter without tyrosine
1238691

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69253yesAerial myceliumGrey white (9002), moss grey (7003)ISP 2
69253yesAerial myceliumGrey white (9002), tarpaulin grey (7010)ISP 3
69253noAerial myceliumISP 4
69253yesAerial myceliumGrey white (9002), green grey (7009)ISP 5
69253yesAerial myceliumSignal white (9003)ISP 6
69253yesAerial myceliumGrey white (9002), moss grey (7003)ISP 7
69253yesAerial myceliumPure white (9010), umbra grey (7022)suter with tyrosine
69253yesAerial myceliumPure white (9010), umbra grey (7022)suter without tyrosine

pigmentation

@refproductionname
69253noMelanin
69253nosoluble pigment

multimedia

  • @ref: 9402
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40243.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9402GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
36707MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulumyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
9402ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
123869CIP Medium 57yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57

culture temp

@refgrowthtypetemperaturerange
9402positivegrowth28mesophilic
36707positivegrowth30mesophilic
53706positivegrowth30mesophilic
67770positivegrowth28mesophilic
123869positivegrowth25-45
123869nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
53706aerobe
123869obligate aerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9402sistomycine (tetraene)
20216Sistomycosin (Tetraen)
67770Sistomycosin

halophily

@refsaltgrowthtested relationconcentration
69253NaClpositivegrowth0-5 %
123869NaClpositivegrowth0-2 %
123869NaClnogrowth4 %
123869NaClnogrowth6 %
123869NaClnogrowth8 %
123869NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
69253arabinose+growth22599
69253cellulose-growth62968
69253fructose+growth28757
69253glucose+growth17234
69253inositol+growth17268
69253mannose+growth37684
69253raffinose-growth16634
69253rhamnose+growth26546
69253sucrose+/-growth17992
69253xylose+growth18222
123869citrate-carbon source16947
123869esculin-hydrolysis4853
123869hippurate-hydrolysis606565
123869nitrate-reduction17632
123869nitrite-reduction16301
123869nitrate-respiration17632
68379nitrate-reduction17632
68379esculin-hydrolysis4853
68379urea-hydrolysis16199
68379gelatin+hydrolysis5291
68379D-glucose-fermentation17634
68379D-ribose-fermentation16988
68379D-xylose-fermentation65327
68379D-mannitol-fermentation16899
68379maltose-fermentation17306
68379lactose-fermentation17716
68379sucrose-fermentation17992
68379glycogen-fermentation28087

metabolite production

  • @ref: 123869
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12386915688acetoin-
12386917234glucose-

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
123869oxidase-
123869beta-galactosidase+3.2.1.23
123869alcohol dehydrogenase-1.1.1.1
123869gelatinase+/-
123869DNase+
123869caseinase+3.4.21.50
123869catalase+1.11.1.6
123869tween esterase+
123869gamma-glutamyltransferase+2.3.2.2
123869lecithinase-
123869lipase-
123869lysine decarboxylase-4.1.1.18
123869ornithine decarboxylase-4.1.1.17
123869phenylalanine ammonia-lyase-4.3.1.24
123869protease+
123869tryptophan deaminase-
123869urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382leucine arylamidase+3.4.11.1
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69253---+------+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- FucosidaseControl
69253++-+/-++/-+/---++/------+--
123869+++-+++--++-----+---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123869----+/-----+/-+/-+/---------------+/-+/--------+/-+/-------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123869+++++----+++++-+++++++++--+----+++-------------------++-++-++-+-+++-----++++----------+-++++-++++++

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
94021Risk group (German classification)
1238691Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces viridosporus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4859D44410121ena67581
9402Streptomyces viridosporus strain NRRL 2414T 16S ribosomal RNA gene, partial sequenceDQ4425561427ena67581

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces viridosporus strain NRRL 241467581.3wgspatric67581
66792Streptomyces viridosporus NRRL 24142806311004draftimg67581
67770Streptomyces viridosporus NRRL 2414GCA_002078235scaffoldncbi67581

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes89.624no
anaerobicno98.962yes
halophileno91.607no
spore-formingyes95.533no
glucose-utilyes88.747yes
thermophileno97.835yes
flagellatedno97.428no
motileno93.799no
aerobicyes92.159yes
glucose-fermentno89.45yes

External links

@ref: 9402

culture collection no.: DSM 40243, ATCC 27479, CBS 654.72, IFO 13353, ISP 5243, JCM 4859, NBRC 13353, NRRL 2414, RIA 1314, CCUG 37512, BCRC 11870, CGMCC 4.1770, IMET 43514, KCTC 9145, NCIMB 9824, VKM Ac-1769, VKM Ac-618, CCRC 11870, NCIB 9824, NRRL ISP-5243, CIP 108230

straininfo link

  • @ref: 85191
  • straininfo: 389366

literature

  • topic: Phylogeny
  • Pubmed-ID: 30141768
  • title: Streptomyces triticisoli sp. nov., a novel actinomycete isolated from rhizosphere soil of wheat (Triticum aestivum L.).
  • authors: Tian Y, Han C, Zhao J, Shi H, Hu J, Jiang S, Han X, Wang X, Xiang W
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002993
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Triticum/*microbiology, Vitamin K 2/chemistry
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9402Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40243)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40243
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36707Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5830
53706Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 37512)https://www.ccug.se/strain?id=37512
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69253Wink, J.https://cdn.dsmz.de/wink/DSM%2040243.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85191Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389366.1StrainInfo: A central database for resolving microbial strain identifiers
123869Curators of the CIPCollection of Institut Pasteur (CIP 108230)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108230