Strain identifier

BacDive ID: 161223

Type strain: Yes

Species: Thermococcus kodakarensis

Strain history: T. Imanaka KOD1.

NCBI tax ID(s): 311400 (species)

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@ref: 67770

BacDive-ID: 161223

keywords: genome sequence, 16S sequence, Archaea

description: Thermococcus kodakarensis JCM 12380 is an archaeon that was isolated from Solfatara at a wharf on Kodakara Island.

NCBI tax id

  • NCBI tax id: 311400
  • Matching level: species

strain history

  • @ref: 67770
  • history: T. Imanaka KOD1.

doi: 10.13145/bacdive161223.20240510.9

Name and taxonomic classification


  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Thermococci
  • order: Thermococcales
  • family: Thermococcaceae
  • genus: Thermococcus
  • species: Thermococcus kodakarensis
  • full scientific name: Thermococcus kodakarensis corrig. Atomi et al. 2005
  • synonyms

    20215Pyrococcus kodakaraensis
    20215Thermococcus kodakaraensis

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Thermococci

order: Thermococcales

family: Thermococcaceae

genus: Thermococcus

species: Thermococcus kodakarensis

full scientific name: Thermococcus kodakarensis Atomi et al. 2005

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 85

Isolation, sampling and environmental information


  • @ref: 67770
  • sample type: Solfatara at a wharf on Kodakara Island
  • geographic location: Kagoshima
  • country: Japan
  • JPN
  • continent: Asia


  • @ref: 69479
  • File name: preview.99_187110.png
  • url:;96_68785;97_89427;98_121709;99_187110&stattab=map
  • Last taxonomy: Thermococcus
  • 16S sequence: D38650
  • Sequence Identity:
  • Total samples: 27
  • soil counts: 2
  • aquatic counts: 25

Sequence information

16S sequences

  • @ref: 67770
  • description: Thermococcus kodakaraensis genes for 16S rRNA, 23S rRNA, complete and partial sequences
  • accession: D38650
  • length: 1789
  • database: nuccore
  • NCBI tax ID: 69014

Genome sequences

  • @ref: 67770
  • description: Thermococcus kodakarensis KOD1
  • accession: GCA_000009965
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 69014

External links

@ref: 67770

culture collection no.: JCM 12380, ATCC BAA-918

straininfo link

  • @ref: 113287
  • straininfo: 139018


  • topic: Enzymology
  • Pubmed-ID: 22752365
  • title: Comparative analysis of the catalytic components in the archaeal dye-linked L-proline dehydrogenase complexes.
  • authors: Kawakami R, Noguchi C, Higashi M, Sakuraba H, Ohshima T
  • journal: Appl Microbiol Biotechnol
  • DOI: 10.1007/s00253-012-4201-2
  • year: 2012
  • mesh: 2,6-Dichloroindophenol/metabolism, Chromatography, Affinity, Cloning, Molecular, Enzyme Stability, Escherichia coli/genetics/metabolism, Ferricyanides/metabolism, Gene Expression, Hot Temperature, Kinetics, Proline/*metabolism, Proline Oxidase/genetics/*metabolism, Protein Stability, Pyrococcus/*enzymology/genetics, Recombinant Proteins/chemistry/genetics/isolation & purification/metabolism, Thermococcus/*enzymology/genetics, Time Factors
  • topic2: Metabolism


20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCM
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 beta
113287Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID139018.1