Strain identifier

BacDive ID: 161223

Type strain: Yes

Species: Thermococcus kodakarensis

Strain history: T. Imanaka KOD1.

NCBI tax ID(s): 311400 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 161223

keywords: genome sequence, 16S sequence, Archaea

description: Thermococcus kodakarensis JCM 12380 is an archaeon that was isolated from Solfatara at a wharf on Kodakara Island.

NCBI tax id

  • NCBI tax id: 311400
  • Matching level: species

strain history

  • @ref: 67770
  • history: T. Imanaka KOD1.

doi: 10.13145/bacdive161223.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Thermococci
  • order: Thermococcales
  • family: Thermococcaceae
  • genus: Thermococcus
  • species: Thermococcus kodakarensis
  • full scientific name: Thermococcus kodakarensis corrig. Atomi et al. 2005
  • synonyms

    @refsynonym
    20215Pyrococcus kodakaraensis
    20215Thermococcus kodakaraensis

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Thermococci

order: Thermococcales

family: Thermococcaceae

genus: Thermococcus

species: Thermococcus kodakarensis

full scientific name: Thermococcus kodakarensis Atomi et al. 2005

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 85

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Solfatara at a wharf on Kodakara Island
  • geographic location: Kagoshima
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_187110.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17827;96_68785;97_89427;98_121709;99_187110&stattab=map
  • Last taxonomy: Thermococcus
  • 16S sequence: D38650
  • Sequence Identity:
  • Total samples: 27
  • soil counts: 2
  • aquatic counts: 25

Sequence information

16S sequences

  • @ref: 67770
  • description: Thermococcus kodakaraensis genes for 16S rRNA, 23S rRNA, complete and partial sequences
  • accession: D38650
  • length: 1789
  • database: nuccore
  • NCBI tax ID: 69014

Genome sequences

  • @ref: 67770
  • description: Thermococcus kodakarensis KOD1
  • accession: GCA_000009965
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 69014

External links

@ref: 67770

culture collection no.: JCM 12380, ATCC BAA-918

straininfo link

  • @ref: 113287
  • straininfo: 139018

literature

  • topic: Enzymology
  • Pubmed-ID: 22752365
  • title: Comparative analysis of the catalytic components in the archaeal dye-linked L-proline dehydrogenase complexes.
  • authors: Kawakami R, Noguchi C, Higashi M, Sakuraba H, Ohshima T
  • journal: Appl Microbiol Biotechnol
  • DOI: 10.1007/s00253-012-4201-2
  • year: 2012
  • mesh: 2,6-Dichloroindophenol/metabolism, Chromatography, Affinity, Cloning, Molecular, Enzyme Stability, Escherichia coli/genetics/metabolism, Ferricyanides/metabolism, Gene Expression, Hot Temperature, Kinetics, Proline/*metabolism, Proline Oxidase/genetics/*metabolism, Protein Stability, Pyrococcus/*enzymology/genetics, Recombinant Proteins/chemistry/genetics/isolation & purification/metabolism, Thermococcus/*enzymology/genetics, Time Factors
  • topic2: Metabolism

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113287Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID139018.1