Strain identifier
BacDive ID: 161223
Type strain:
Species: Thermococcus kodakarensis
Strain history: T. Imanaka KOD1.
NCBI tax ID(s): 311400 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161223
keywords: genome sequence, 16S sequence, Archaea, hyperthermophilic
description: Thermococcus kodakarensis JCM 12380 is a hyperthermophilic archaeon that was isolated from Solfatara at a wharf on Kodakara Island.
NCBI tax id
- NCBI tax id: 311400
- Matching level: species
strain history
- @ref: 67770
- history: T. Imanaka KOD1.
doi: 10.13145/bacdive161223.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermococci
- order: Thermococcales
- family: Thermococcaceae
- genus: Thermococcus
- species: Thermococcus kodakarensis
- full scientific name: Thermococcus kodakarensis corrig. Atomi et al. 2005
synonyms
@ref synonym 20215 Pyrococcus kodakaraensis 20215 Thermococcus kodakaraensis
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Thermococci
order: Thermococcales
family: Thermococcaceae
genus: Thermococcus
species: Thermococcus kodakarensis
full scientific name: Thermococcus kodakarensis Atomi et al. 2005
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 85
- range: hyperthermophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Solfatara at a wharf on Kodakara Island
- geographic location: Kagoshima
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_187110.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17827;96_68785;97_89427;98_121709;99_187110&stattab=map
- Last taxonomy: Thermococcus
- 16S sequence: D38650
- Sequence Identity:
- Total samples: 27
- soil counts: 2
- aquatic counts: 25
Sequence information
16S sequences
- @ref: 67770
- description: Thermococcus kodakaraensis genes for 16S rRNA, 23S rRNA, complete and partial sequences
- accession: D38650
- length: 1789
- database: ena
- NCBI tax ID: 69014
Genome sequences
- @ref: 67770
- description: Thermococcus kodakarensis KOD1
- accession: GCA_000009965
- assembly level: complete
- database: ncbi
- NCBI tax ID: 69014
External links
@ref: 67770
culture collection no.: JCM 12380, ATCC BAA 918
straininfo link
- @ref: 113287
- straininfo: 139018
literature
- topic: Enzymology
- Pubmed-ID: 22752365
- title: Comparative analysis of the catalytic components in the archaeal dye-linked L-proline dehydrogenase complexes.
- authors: Kawakami R, Noguchi C, Higashi M, Sakuraba H, Ohshima T
- journal: Appl Microbiol Biotechnol
- DOI: 10.1007/s00253-012-4201-2
- year: 2012
- mesh: 2,6-Dichloroindophenol/metabolism, Chromatography, Affinity, Cloning, Molecular, Enzyme Stability, Escherichia coli/genetics/metabolism, Ferricyanides/metabolism, Gene Expression, Hot Temperature, Kinetics, Proline/*metabolism, Proline Oxidase/genetics/*metabolism, Protein Stability, Pyrococcus/*enzymology/genetics, Recombinant Proteins/chemistry/genetics/isolation & purification/metabolism, Thermococcus/*enzymology/genetics, Time Factors
- topic2: Metabolism
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
113287 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID139018.1 |