Strain identifier

BacDive ID: 161217

Type strain: No

Species: Actinocatenispora thailandica

Strain history: C. Thawai TT2-3.

NCBI tax ID(s): 227318 (species)

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General

@ref: 67770

BacDive-ID: 161217

keywords: 16S sequence, Bacteria

description: Actinocatenispora thailandica JCM 12344 is a bacterium that was isolated from Peat swamp forest soil.

NCBI tax id

  • NCBI tax id: 227318
  • Matching level: species

strain history

  • @ref: 67770
  • history: C. Thawai TT2-3.

doi: 10.13145/bacdive161217.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Actinocatenispora
  • species: Actinocatenispora thailandica
  • full scientific name: Actinocatenispora thailandica Thawai et al. 2006

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micromonosporales

family: Micromonosporaceae

genus: Actinocatenispora

species: Actinocatenispora thailandica

full scientific name: Actinocatenispora thailandica Thawai et al. 2006

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-9(H6)

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Peat swamp forest soil
  • geographic location: Pattaloong Province
  • country: Thailand
  • origin.country: THA
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_5573.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_2691;97_3305;98_4159;99_5573&stattab=map
  • Last taxonomy: Actinocatenispora
  • 16S sequence: AB159211
  • Sequence Identity:
  • Total samples: 5356
  • soil counts: 2874
  • aquatic counts: 438
  • animal counts: 1016
  • plant counts: 1028

Sequence information

16S sequences

  • @ref: 67770
  • description: Actinocatenispora thailandica gene for 16S rRNA, partial sequence, strain: TT2-3
  • accession: AB159211
  • length: 1434
  • database: nuccore
  • NCBI tax ID: 227318

GC content

  • @ref: 67770
  • GC-content: 72.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 12344, PCU 236

straininfo link

  • @ref: 113285
  • straininfo: 301460

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113285Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID301460.1