Strain identifier
BacDive ID: 161213
Type strain: 
Species: Thauera sp.
Strain history: N. Kato DNT-1.
NCBI tax ID(s): 167065 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161213
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Thauera sp. JCM 12309 is a mesophilic, motile bacterium that was isolated from Anaerobic sludge from a wastewater treatment plant.
NCBI tax id
- NCBI tax id: 167065
- Matching level: species
strain history
- @ref: 67770
- history: N. Kato DNT-1.
doi: 10.13145/bacdive161213.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Rhodocyclales
- family: Zoogloeaceae
- genus: Thauera
- species: Thauera sp.
- full scientific name: Thauera Macy et al. 1993
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Rhodocyclales
family: Zoogloeaceae
genus: Thauera
species: Thauera sp.
full scientific name: Thauera sp.
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 93.765 | |
| 69480 | 100 | negative |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.995 |
| 69481 | no | 98 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Anaerobic sludge from a wastewater treatment plant
taxonmaps
- @ref: 69479
- File name: preview.99_1902.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_594;97_695;98_810;99_1902&stattab=map
- Last taxonomy: Thauera
- 16S sequence: AB066262
- Sequence Identity:
- Total samples: 548
- soil counts: 20
- aquatic counts: 491
- animal counts: 31
- plant counts: 6
Sequence information
16S sequences
- @ref: 67770
- description: Thauera sp. DNT-1 gene for 16S ribosomal RNA
- accession: AB066262
- length: 1461
- database: ena
- NCBI tax ID: 167065
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thauera sp. DNT-1 JCM 12309 | GCA_001310835 | contig | ncbi | 167065 |
| 66792 | Thauera sp. DNT-1 strain JCM 12309 | 167065.3 | wgs | patric | 167065 |
| 66792 | Thauera sp. JCM 12309 | 2728369658 | draft | img | 167065 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 98 | no |
| motile | yes | 92.063 | no |
| gram-positive | no | 98.431 | no |
| anaerobic | no | 88.956 | no |
| aerobic | no | 57.863 | no |
| halophile | no | 94.344 | no |
| spore-forming | no | 94.32 | no |
| thermophile | no | 93.837 | no |
| glucose-util | no | 73.98 | no |
| flagellated | yes | 82.768 | no |
| glucose-ferment | no | 88.785 | no |
External links
@ref: 67770
culture collection no.: JCM 12309
straininfo link
- @ref: 113281
- straininfo: 231872
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 113281 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID231872.1 |