Strain identifier
BacDive ID: 161207
Type strain: 
Species: Natronolimnohabitans innermongolicus
Strain history: T. Itoh <-- P. Zhou and H. Xin N-1311.
NCBI tax ID(s): 1227499 (strain), 253107 (species)
General
@ref: 67770
BacDive-ID: 161207
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Natronolimnohabitans innermongolicus JCM 12255 is a mesophilic archaeon that was isolated from Soda lake in Inner Mongolia Autonomous Region.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 253107 | species |
| 1227499 | strain |
strain history
- @ref: 67770
- history: T. Itoh <-- P. Zhou and H. Xin N-1311.
doi: 10.13145/bacdive161207.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Natrialbales
- family: Natrialbaceae
- genus: Natronolimnohabitans
- species: Natronolimnohabitans innermongolicus
- full scientific name: Natronolimnohabitans innermongolicus (Itoh et al. 2005) Sorokin et al. 2020
synonyms
- @ref: 20215
- synonym: Natronolimnobius innermongolicus
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Natrialbales
family: Natrialbaceae
genus: Natronolimnohabitans
species: Natronolimnohabitans innermongolicus
full scientific name: Natronolimnohabitans innermongolicus (Itoh et al. 2005) Sorokin et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8 and MK-8(H2)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soda lake in Inner Mongolia Autonomous Region
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Natronolimnobius innermongolicus gene for 16S rRNA, partial sequence, strain: N-1311
- accession: AB125108
- length: 1437
- database: ena
- NCBI tax ID: 253107
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Natronolimnobius innermongolicus JCM 12255 | 2529293002 | draft | img | 1227499 |
| 67770 | Natronolimnohabitans innermongolicus JCM 12255 | GCA_000337215 | contig | ncbi | 1227499 |
| 66792 | Natronolimnobius innermongolicus JCM 12255 | 1227499.3 | wgs | patric | 1227499 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 67770 | 64.3 | genome sequence analysis |
| 67770 | 63.1 | high performance liquid chromatography (HPLC) |
External links
@ref: 67770
culture collection no.: JCM 12255, CGMCC 1.2124
straininfo link
- @ref: 113277
- straininfo: 231869
literature
- topic: Phylogeny
- Pubmed-ID: 15841343
- title: Natronolimnobius baerhuensis gen. nov., sp. nov. and Natronolimnobius innermongolicus sp. nov., novel haloalkaliphilic archaea isolated from soda lakes in Inner Mongolia, China.
- authors: Itoh T, Yamaguchi T, Zhou P, Takashina T
- journal: Extremophiles
- DOI: 10.1007/s00792-004-0426-z
- year: 2004
- mesh: Archaea/*classification/*physiology, Base Composition, China, Chromatography, Thin Layer, DNA/chemistry, DNA, Archaeal, DNA, Ribosomal, Genes, rRNA, Glycolipids/chemistry, Hydrogen-Ion Concentration, Lipids/chemistry, Phenotype, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/chemistry, Sodium Chloride/pharmacology, Species Specificity, Temperature, Water
- topic2: Phenotype
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 113277 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID231869.1 |